Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Forward (+)

87599442 .. 87600231

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG569900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTGGCTTGGAACATTTGAAACTGCCGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGCCTTCTTCGTGGTTCGAATACTAGAACCAACTTCACCAGCACTCATGTTCCTTCCAATTCTCCACTCTCTTTGAAAATCAAGAAACTCCTCAACCACAAAAAGAGCTTGAAACAACAAAGCCCTTCAACCCCCAACACCATAAAAACCACCCCTAAAGCTAGTACTAGAATTAGTAGTACTATTACTGATAACGATATTCAGAGTTCTAGTTACTATAATGCTAATTGCAGCTCTCTGCCTAGTTTCAAATCCCAGAACATTGAGGTCTCTGGTGATGCATATAGACCAGACCTCAGCCATTGCATTGGGGATCTTCAAGTACCGGCTATGTTCCACTTCGATCAACCATGGCAATTCTTAAGCGGGTTTGATCAGCTTCCGCATTACCATGAAGGGCTGTATTTAACAAAAGGCATTGCCACTGGAGTGTCACATAGTGCAGCAGAGCCAAATCAGCTGACAGAATTCGAACACGCAAAGATAGAAAGACAGATAACTTCTGCTTCATTTTATGCAATGAACGGAGTCAGCGAGTACTTGGAGACTGCATATGATGATGCAAGTGATGCCTTGTGGGATCTTCCTACTCTGTCTCAGTTGTTCTGCCTGGCCGATGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

228

Amino Acids

25.24

Weight (kDa)

5.28

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	426, 443
AclWI	GGATC	2 cut(s)	381, 648
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	4 cut(s)	226, 241, 384, 599
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	6 cut(s)	20, 136, 172, 189, 310, 380
AjnI	CCWGG	1 cut(s)	669
AleI	CACNNNNGTG	1 cut(s)	488
AluBI	AGCT	8 cut(s)	35, 44, 56, 168, 221, 294, 439, 520
AluI	AGCT	8 cut(s)	35, 44, 56, 168, 221, 294, 439, 520
Alw26I	GTCTC	3 cut(s)	334, 599, 660
AlwI	GGATC	2 cut(s)	381, 648
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	672
ApeKI	GCWGC	4 cut(s)	35, 56, 291, 503
ApoI	RAATTY	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	88, 347
AsuII	TTCGAA	2 cut(s)	77, 531
AvaI	CYCGRG	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	4 cut(s)	22, 43, 303, 515
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BciT130I	CCWGG	1 cut(s)	671
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	334, 599, 660
BfaI	CTAG	5 cut(s)	84, 222, 228, 270, 303
BfrI	CTTAAG	1 cut(s)	421
BisI	GCNGC	4 cut(s)	36, 57, 292, 504
BlsI	GCNGC	4 cut(s)	37, 58, 293, 505
BmcAI	AGTACT	3 cut(s)	226, 241, 599
Bme1390I	CCNGG	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	4 cut(s)	328, 610, 619, 670
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	356
Bpu14I	TTCGAA	2 cut(s)	77, 531
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	27, 410
Bse118I	RCCGGY	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	3 cut(s)	361, 477, 585
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	27, 410
BseMI	GCAATG	3 cut(s)	361, 477, 585
BseMII	CTCAG	2 cut(s)	370, 671
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	22, 43, 303, 515
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	386
BsmAI	GTCTC	3 cut(s)	334, 599, 660
BsnI	GGCC	1 cut(s)	674
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	2 cut(s)	77, 531
Bsp143I	GATC	4 cut(s)	373, 403, 433, 640
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	426, 443
BspANI	GGCC	1 cut(s)	674
BspCNI	CTCAG	2 cut(s)	369, 670
BspPI	GGATC	2 cut(s)	381, 648
BspT104I	TTCGAA	2 cut(s)	77, 531
BspTI	CTTAAG	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	3 cut(s)	361, 477, 585
BsrFI	RCCGGY	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	27, 410
BssMI	GATC	4 cut(s)	373, 403, 433, 640
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBI	TTCGAA	2 cut(s)	77, 531
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	356, 657
BstDSI	CCRYGG	1 cut(s)	410
BstKTI	GATC	4 cut(s)	376, 406, 436, 643
BstMAI	GTCTC	3 cut(s)	334, 599, 660
BstMBI	GATC	4 cut(s)	373, 403, 433, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 517, 629, 680
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	669
BstV1I	GCAGC	4 cut(s)	22, 43, 303, 515
BstX2I	RGATCY	2 cut(s)	373, 640
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	2 cut(s)	373, 640
BsuRI	GGCC	1 cut(s)	674
BtgI	CCRYGG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	385
Csp6I	GTAC	4 cut(s)	225, 240, 383, 598
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	4 cut(s)	60, 107, 411, 452
CviQI	GTAC	4 cut(s)	225, 240, 383, 598
DdeI	CTNAG	2 cut(s)	356, 657
DpnI	GATC	4 cut(s)	375, 405, 435, 642
DpnII	GATC	4 cut(s)	373, 403, 433, 640
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	63, 110, 414, 455
FatI	CATG	4 cut(s)	59, 106, 410, 451
FauI	CCCGC	1 cut(s)	419
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	36, 57, 292, 504
Fsp4HI	GCNGC	4 cut(s)	36, 57, 292, 504
FspBI	CTAG	5 cut(s)	84, 222, 228, 270, 303
GluI	GCNGC	4 cut(s)	36, 57, 292, 504
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	674
HapII	CCGG	1 cut(s)	386
Hin1II	CATG	4 cut(s)	63, 110, 414, 455
HinfI	GANTC	1 cut(s)	588
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	2 cut(s)	88, 347
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	74, 123, 195, 449
HpyCH4V	TGCA	8 cut(s)	59, 291, 341, 366, 503, 578, 611, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 517, 629, 680
HpyF3I	CTNAG	2 cut(s)	356, 657
Hsp92II	CATG	4 cut(s)	63, 110, 414, 455
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	4 cut(s)	373, 403, 433, 640
LpnPI	CCDG	8 cut(s)	112, 318, 329, 363, 399, 471, 656, 683
Lsp1109I	GCAGC	4 cut(s)	22, 43, 303, 515
LweI	GCATC	4 cut(s)	328, 610, 619, 670
MaeI	CTAG	5 cut(s)	84, 222, 228, 270, 303
MaeIII	GTNAC	2 cut(s)	272, 492
MalI	GATC	4 cut(s)	375, 405, 435, 642
MboI	GATC	4 cut(s)	373, 403, 433, 640
MboII	GAAGA	3 cut(s)	59, 368, 635
MflI	RGATCY	2 cut(s)	373, 640
MluCI	AATT	5 cut(s)	118, 231, 286, 416, 527
MlyI	GAGTC	1 cut(s)	597
MnlI	CCTC	4 cut(s)	22, 161, 319, 365
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	2 cut(s)	422, 467
MslI	CAYNNNNRTG	2 cut(s)	450, 488
MspA1I	CMGCKG	1 cut(s)	520
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	671
MvaI	CCWGG	1 cut(s)	671
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 517, 629, 680
NcoI	CCATGG	1 cut(s)	410
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	373, 403, 433, 640
NlaIII	CATG	4 cut(s)	63, 110, 414, 455
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	1 cut(s)	63
NspV	TTCGAA	2 cut(s)	77, 531
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	591
PkrI	GCNGC	4 cut(s)	37, 58, 293, 505
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspXI	VCTCGAGB	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	373, 640
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	4 cut(s)	226, 241, 384, 599
RsaNI	GTAC	4 cut(s)	225, 240, 383, 598
RseI	CAYNNNNRTG	2 cut(s)	450, 488
SaqAI	TTAA	2 cut(s)	422, 467
SatI	GCNGC	4 cut(s)	36, 57, 292, 504
Sau3AI	GATC	4 cut(s)	373, 403, 433, 640
ScaI	AGTACT	3 cut(s)	226, 241, 599
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	671
SfaNI	GCATC	4 cut(s)	328, 610, 619, 670
Sfr274I	CTCGAG	1 cut(s)	39
SfuI	TTCGAA	2 cut(s)	77, 531
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	450, 488
SmlI	CTYRAG	2 cut(s)	39, 421
SmoI	CTYRAG	2 cut(s)	39, 421
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	5 cut(s)	118, 231, 286, 416, 527
SsiI	CCGC	2 cut(s)	426, 443
SspMI	CTAG	5 cut(s)	84, 222, 228, 270, 303
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	410
TaqI	TCGA	4 cut(s)	40, 77, 402, 531
TasI	AATT	5 cut(s)	118, 231, 286, 416, 527
TatI	WGTACW	3 cut(s)	224, 239, 597
Tru1I	TTAA	2 cut(s)	422, 467
Tru9I	TTAA	2 cut(s)	422, 467
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	4 cut(s)	35, 56, 291, 503
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	4 cut(s)	66, 468, 558, 596
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	490
Vha464I	CTTAAG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	5 cut(s)	84, 222, 228, 270, 303
ZrmI	AGTACT	3 cut(s)	226, 241, 599
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.