Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005037

Physical Location & Seq

Genomic Coordinates Reverse (-)

446730 .. 447596

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G004400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAGAAGAACATGAAGAAGCCCCAAAGCAGCAAAAGGAAAATGGGGTCTCAGTCTCAGCCAACAAACAAAGCAAGTTGAAGACCAAATGCAAGTTCGTTGGGGTGAGACAGAGGCCATCAGGGAAGTGGGTGGCAGAGATCAAGGACACAACAAAGAAGATAAGAATGTGGCTGGGAACCTTTGAGACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTATCTTCTTCGTGGCTCCAACACCCGAACCAACTTCTCCACTCACGTCCCTTCCAATTCTCCACTCTCTTTGAAAATCAGAAACCTCCTCAACCACAAGAAAAGTTTGAATTTGAAGCAAAAACAAAGCCCTCCACCAACCCCCAACAGCAGCTTAAAATCCACCCCTATAGCTGCTACAACTACTAGAATTAGTTCTAGCTCTAGCATTTGTAGCGGCAATATTCAAGCGTTTAGTGACACTTCATCAGCCAACTGCAATGCTAATTCTAGTTCTCCTCTGCCTTGCTACAAAAGCCAGGACATTCAAGCGTTTGATGATGCATATAGACCAGACCTTAGCAACTGCATTGGGGAGCTTCAACCGGCTATGTTTCATTTGGATCAGTCATGGCCGTTCCTAGCTGGGTTTGATCAGCTTCCACTAACCCATGAAGGGATGGACTTAACAAAAGGCATTGGTAATGTTGCAGCAGCAGAGGCAGAGGTGGCGGAGTTTGAGCGCTTAAAGGTAGAGAGGCAGATATCAGCTTCGATTTATGCAATGAATGGAGGGAATGAGTATGTGGACAATGAGTACGATGGAAGTGATGCTTTATGGGATCTTCCTACTCTCTCGCAGTTGTTCTGCCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009877 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0035864 GO:0035865 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

289

Amino Acids

31.69

Weight (kDa)

6.01

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19790
fragaria_vesca	FvH4_6g02490
malus_domestica	MD03G1004500.v1.1 MD11G1005200.v1.1 MD12G1004600.v1.1 MD14G1003100.v1.1
prunus_persica	Prupe.6G004400_v2.0.a1 Prupe.7G004900_v2.0.a1
pyrus_communis	pycom03g00470 pycom11g00430 pycom14g00100
rosa_chinensis	RchiOBHm_Chr3g0450351 RchiOBHm_Chr5g0083271
rosa_laevigata	RLG00000025736 RLG00000037025
rosa_multiflora	Rmu_sc0000330.1_g000004 Rmu_sc0011792.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001220 Rroxscaffold_6G00428080
rosa_rugosa	Rorug02G0627100.1 Rorug05G0483900
rosa_samantha	Rh3AG027500 Rh3BG028200 Rh3CG026900 Rh3DG028100 Rh5BG560600 Rh5CG583300 Rh5DG569900
rosa_wichuraiana	Rw3G002140 Rw5G049960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	444, 719
AclWI	GGATC	2 cut(s)	618, 837
AcoI	YGGCCR	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	806
AfeI	AGCGCT	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	663
AgsI	TTSAA	7 cut(s)	82, 301, 337, 343, 455, 536, 590
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
Alw26I	GTCTC	4 cut(s)	55, 61, 103, 182
AlwI	GGATC	2 cut(s)	618, 837
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	731
AoxI	GGCC	2 cut(s)	116, 620
ApeKI	GCWGC	7 cut(s)	31, 203, 224, 378, 401, 698, 701
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	7 cut(s)	43, 190, 211, 388, 390, 710, 713
BccI	CCATC	3 cut(s)	127, 661, 803
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	4 cut(s)	55, 61, 103, 182
BfaI	CTAG	5 cut(s)	414, 426, 432, 498, 629
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	733
BisI	GCNGC	8 cut(s)	32, 204, 225, 379, 402, 445, 699, 702
BlsI	GCNGC	8 cut(s)	33, 205, 226, 380, 403, 446, 700, 703
Bme1390I	CCNGG	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	181, 244
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	538, 808
BpiI	GAAGAC	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	195, 566
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse118I	RCCGGY	1 cut(s)	592
Bse3DI	GCAATG	2 cut(s)	493, 777
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	2 cut(s)	493, 777
BseMII	CTCAG	3 cut(s)	66, 72, 186
BseRI	GAGGAG	2 cut(s)	305, 495
BseXI	GCAGC	7 cut(s)	43, 190, 211, 388, 390, 710, 713
BseYI	CCCAGC	2 cut(s)	175, 632
BshFI	GGCC	2 cut(s)	118, 622
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	4 cut(s)	55, 61, 103, 182
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	118, 622
Bso31I	GGTCTC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	4 cut(s)	141, 610, 640, 829
BspACI	CCGC	2 cut(s)	444, 719
BspANI	GGCC	2 cut(s)	118, 622
BspCNI	CTCAG	3 cut(s)	65, 71, 187
BspLI	GGNNCC	2 cut(s)	181, 244
BspPI	GGATC	2 cut(s)	618, 837
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	493, 777
BsrFI	RCCGGY	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	4 cut(s)	141, 610, 640, 829
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	527
BstDEI	CTNAG	4 cut(s)	52, 58, 195, 566
BstF5I	GGATG	1 cut(s)	672
BstH2I	RGCGCY	1 cut(s)	733
BstHHI	GCGC	1 cut(s)	732
BstKTI	GATC	4 cut(s)	144, 613, 643, 832
BstMAI	GTCTC	4 cut(s)	55, 61, 103, 182
BstMBI	GATC	4 cut(s)	141, 610, 640, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 209, 441, 522, 707, 716
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	7 cut(s)	43, 190, 211, 388, 390, 710, 713
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	118, 622
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	672
CfoI	GCGC	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	592
Csp6I	GTAC	1 cut(s)	805
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	3 cut(s)	14, 618, 659
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	4 cut(s)	52, 58, 195, 566
DpnI	GATC	4 cut(s)	143, 612, 642, 831
DpnII	GATC	4 cut(s)	141, 610, 640, 829
EaeI	YGGCCR	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	859
Eco31I	GGTCTC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	753
Eco47III	AGCGCT	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	525
EcoRV	GATATC	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	859
EcoT22I	ATGCAT	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	3 cut(s)	17, 621, 662
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	13, 617, 658
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	8 cut(s)	32, 204, 225, 379, 402, 445, 699, 702
FokI	GGATG	1 cut(s)	679
Fsp4HI	GCNGC	8 cut(s)	32, 204, 225, 379, 402, 445, 699, 702
FspBI	CTAG	5 cut(s)	414, 426, 432, 498, 629
GlaI	GCGC	1 cut(s)	731
GluI	GCNGC	8 cut(s)	32, 204, 225, 379, 402, 445, 699, 702
GsaI	CCCAGC	2 cut(s)	179, 636
HaeII	RGCGCY	1 cut(s)	733
HaeIII	GGCC	2 cut(s)	118, 622
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	1 cut(s)	732
Hin1II	CATG	3 cut(s)	17, 621, 662
Hin6I	GCGC	1 cut(s)	730
HinP1I	GCGC	1 cut(s)	730
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	2 cut(s)	288, 656
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	6 cut(s)	93, 486, 551, 576, 698, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 209, 441, 522, 707, 716
HpyF3I	CTNAG	4 cut(s)	52, 58, 195, 566
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	17, 621, 662
HspAI	GCGC	1 cut(s)	730
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	141, 610, 640, 829
LmnI	GCTCC	2 cut(s)	248, 583
LpnPI	CCDG	7 cut(s)	108, 161, 512, 539, 573, 606, 618
Lsp1109I	GCAGC	7 cut(s)	43, 190, 211, 388, 390, 710, 713
LweI	GCATC	2 cut(s)	538, 808
MaeI	CTAG	5 cut(s)	414, 426, 432, 498, 629
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	143, 612, 642, 831
MboI	GATC	4 cut(s)	141, 610, 640, 829
MboII	GAAGA	8 cut(s)	17, 20, 29, 94, 172, 224, 227, 824
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	4 cut(s)	283, 337, 417, 493
MmeI	TCCRAC	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	3 cut(s)	383, 674, 734
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	6 cut(s)	200, 209, 441, 522, 707, 716
NdeII	GATC	4 cut(s)	141, 610, 640, 829
NlaIII	CATG	3 cut(s)	17, 621, 662
NlaIV	GGNNCC	2 cut(s)	181, 244
NmuCI	GTSAC	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	421
PkrI	GCNGC	8 cut(s)	33, 205, 226, 380, 403, 446, 700, 703
Psp6I	CCWGG	1 cut(s)	525
PspFI	CCCAGC	2 cut(s)	175, 632
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	181, 244
PspXI	VCTCGAGB	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	383, 674, 734
SatI	GCNGC	8 cut(s)	32, 204, 225, 379, 402, 445, 699, 702
Sau3AI	GATC	4 cut(s)	141, 610, 640, 829
ScrFI	CCNGG	1 cut(s)	527
SfaNI	GCATC	2 cut(s)	538, 808
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	4 cut(s)	283, 337, 417, 493
SsiI	CCGC	2 cut(s)	444, 719
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	5 cut(s)	414, 426, 432, 498, 629
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	1 cut(s)	859
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	208, 761
TasI	AATT	4 cut(s)	283, 337, 417, 493
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	3 cut(s)	383, 674, 734
Tru9I	TTAA	3 cut(s)	383, 674, 734
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	7 cut(s)	31, 203, 224, 378, 401, 698, 701
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	6 cut(s)	30, 234, 462, 593, 675, 788
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	5 cut(s)	414, 426, 432, 498, 629
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.