AT5G24105

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003518
Physical Location & Seq
Forward (+)
8151907 .. 8153007
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24105.1

Sequence Viewer

Length: 192 bp
ATGTCGGGCTCGAGGCTTTTCTTCGGAGTTTCTACAATTGTATCGATAATTTTCGCCATTTTGTTGCCGATGGCACATGCTCAATCCGCAGCTCCTGCTCCGGCTCCAACAAGCGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGTGGCTTTGGTCCTCACATATCTCATCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

63

Amino Acids

6.57

Weight (kDa)

5.94

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 31 - 63 2.2e-19 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 24, 57
BanII GRGCYC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 64
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 11
BspACI CCGC 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNSI RCATGY 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 44
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 9, 16, 92, 104, 164
CviKI_1 RGCY 5 cut(s) 9, 16, 92, 104, 164
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 80
FaiI YATR 6 cut(s) 78, 140, 145, 147, 155, 178
FatI CATG 1 cut(s) 76
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 80
HpaII CCGG 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 3 cut(s) 97, 103, 109
LpnPI CCDG 2 cut(s) 108, 114
Lsp1109I GCAGC 1 cut(s) 101
MboII GAAGA 1 cut(s) 13
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 36, 48
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 2 cut(s) 6, 182
MspI CCGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeI CATATG 1 cut(s) 145
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 105
NspI RCATGY 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 10
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 169
PspXI VCTCGAGB 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 95
SatI GCNGC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 169
SduI GDGCHC 1 cut(s) 11
SetI ASST 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 10
SgeI CNNG 8 cut(s) 18, 22, 24, 89, 107, 113, 123, 146
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 36, 48
SsiI CCGC 1 cut(s) 87
StyI CCWWGG 1 cut(s) 133
TaqI TCGA 2 cut(s) 11, 44
TasI AATT 2 cut(s) 36, 48
TseI GCWGC 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.