FvH4_1g06710

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003518
Physical Location & Seq
Forward (+)
3540124 .. 3541042
919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06710.t1

Sequence Viewer

Length: 195 bp
ATGGAGATGCTCAGACTTAGCTTTTTTGTCATGGCTATTCTTGCTGCAGTTATCGTTTCTCTTCTTCTACCTTCCATCAATGCTCAAAGCCTCGCACCGGCTCCCGCCCCCACGAGTGATGGGGTAGCAGTTGATCAAGGAATCGCGTATGCGCTGATGGCGTTTGCTCTGTTTCTCACCTATATCATTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

65

Amino Acids

6.78

Weight (kDa)

4.54

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 32 - 64 4.6e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 169
BauI CACGAG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 31
BccI CCATC 3 cut(s) 83, 113, 151
BclI TGATCA 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 97
BssMI GATC 1 cut(s) 133
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 11, 17
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 41, 158
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 97
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 21, 35, 90, 101
CviKI_1 RGCY 4 cut(s) 21, 35, 90, 101
DdeI CTNAG 2 cut(s) 11, 17
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 150, 183
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 112
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 98
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 158
HpyF3I CTNAG 2 cut(s) 11, 17
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 53, 56
MnlI CCTC 1 cut(s) 101
MspI CCGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 41, 158
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 49
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 133
SetI ASST 3 cut(s) 23, 73, 182
SfcI CTRYAG 1 cut(s) 45
SgeI CNNG 9 cut(s) 43, 53, 104, 110, 116, 124, 126, 149, 157
SsiI CCGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 141
TseI GCWGC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.