Rorug07G0024100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002180
Physical Location & Seq
Reverse (-)
1734398 .. 1739028
4631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0024100.1

Sequence Viewer

Length: 570 bp
ATGGGAAACCAAGCCGAAAACAAAACAACAAAGGAACTGGGACTAGAAGCCAACAAGAGTGTGCTCCCCCGACTCTCAAGCCGGAGATCAGGATCCGTTTCTAGAGAGAAGGCAGAGCTATTTTCGAGGGGGCTTTCTATTAGCAATGACTATATTGATTTTGTGAATGGGGTTATGTGCCCTTTTATGTGTTTTTTCTTCTGCCGTTTGCTAGCTATGTGGTTCTTGCCTCGACTTGCTAGCTATTTGGAAAAGAATACTGTACCGACCGATGAAGAAGGGGTTGTTACCCCTGTGAACCAGTTAAAACAAGAGAAAAGAGAATGTGGTATTGAATGCGAGATTGTGACCCCCTTAAACCTGCCAGAACAAGAAGAAATCTGCCTCACACCGCCGGAATGTGAAGATATGAAAACTGAAGAATGCGGGATTGCGACTCCTATGAACCAGCCAGAACAAGAAGAAAATATGGTCGATGTTAATTTCTGCCTCACACCACTATGGGAAGATACGAAAACTGAAGAATGTGCGACTAGGGGCAGGGCTAAGAGAAAGCTCGCTCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.47

Weight (kDa)

4.78

Isoelectric Point (pI)

64.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AciI CCGC 2 cut(s) 392, 426
AclWI GGATC 2 cut(s) 87, 100
AcuI CTGAAG 2 cut(s) 438, 540
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 335
AluBI AGCT 5 cut(s) 118, 215, 243, 556, 565
AluI AGCT 5 cut(s) 118, 215, 243, 556, 565
Alw21I GWGCWC 1 cut(s) 66
AlwI GGATC 2 cut(s) 87, 100
AsuNHI GCTAGC 2 cut(s) 211, 239
BaeGI GKGCMC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 189
BfaI CTAG 5 cut(s) 44, 102, 212, 240, 534
BfuAI ACCTGC 1 cut(s) 369
BlpI GCTNAGC 1 cut(s) 561
BmiI GGNNCC 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 47
BmtI GCTAGC 2 cut(s) 215, 243
BmuI ACTGGG 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 42, 301
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 91
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 2 cut(s) 42, 301
BseSI GKGCMC 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 82, 395
BslFI GGGAC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 54
BsmI GAATGC 2 cut(s) 341, 428
Bsp1286I GDGCHC 2 cut(s) 66, 182
Bsp143I GATC 2 cut(s) 86, 92
Bsp1720I GCTNAGC 1 cut(s) 561
BspACI CCGC 2 cut(s) 392, 426
BspLI GGNNCC 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 369
BspOI GCTAGC 2 cut(s) 215, 243
BspPI GGATC 2 cut(s) 87, 100
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 42, 301
BssMI GATC 2 cut(s) 86, 92
Bst4CI ACNGT 1 cut(s) 262
BstC8I GCNNGC 3 cut(s) 213, 241, 558
BstDEI CTNAG 2 cut(s) 546, 561
BstKTI GATC 2 cut(s) 89, 95
BstMBI GATC 2 cut(s) 86, 92
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstSLI GKGCMC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 3 cut(s) 213, 241, 558
Csp6I GTAC 1 cut(s) 263
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 546, 561
DpnI GATC 2 cut(s) 88, 94
DpnII GATC 2 cut(s) 86, 92
Eco57I CTGAAG 2 cut(s) 438, 540
FaiI YATR 8 cut(s) 153, 176, 188, 218, 410, 443, 470, 502
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 1 cut(s) 419
FspBI CTAG 5 cut(s) 44, 102, 212, 240, 534
HapII CCGG 2 cut(s) 82, 395
HinfI GANTC 2 cut(s) 72, 436
HpaII CCGG 2 cut(s) 82, 395
Hpy166II GTNNAC 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 90, 102
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 103, 272
HpyCH4III ACNGT 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 2 cut(s) 546, 561
Kzo9I GATC 2 cut(s) 86, 92
LmnI GCTCC 1 cut(s) 69
MaeI CTAG 5 cut(s) 44, 102, 212, 240, 534
MaeIII GTNAC 2 cut(s) 286, 346
MalI GATC 2 cut(s) 88, 94
MboI GATC 2 cut(s) 86, 92
MboII GAAGA 8 cut(s) 190, 287, 386, 416, 431, 473, 518, 533
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 2 cut(s) 66, 182
MluCI AATT 1 cut(s) 481
MlyI GAGTC 2 cut(s) 66, 430
MnlI CCTC 4 cut(s) 120, 240, 395, 500
MseI TTAA 4 cut(s) 305, 356, 480, 568
MslI CAYNNNNRTG 1 cut(s) 499
MspI CCGG 2 cut(s) 82, 395
Mva1269I GAATGC 2 cut(s) 341, 428
MwoI GCNNNNNNNGC 1 cut(s) 562
NdeII GATC 2 cut(s) 86, 92
NheI GCTAGC 2 cut(s) 211, 239
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 346
PctI GAATGC 2 cut(s) 341, 428
PleI GAGTC 2 cut(s) 66, 430
PpsI GAGTC 2 cut(s) 66, 430
PspN4I GGNNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 499
SaqAI TTAA 4 cut(s) 305, 356, 480, 568
Sau3AI GATC 2 cut(s) 86, 92
SchI GAGTC 2 cut(s) 66, 430
SduI GDGCHC 2 cut(s) 66, 182
SetI ASST 6 cut(s) 120, 217, 245, 363, 558, 567
SmiMI CAYNNNNRTG 1 cut(s) 499
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 481
SsiI CCGC 2 cut(s) 392, 426
SspMI CTAG 5 cut(s) 44, 102, 212, 240, 534
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 3 cut(s) 125, 232, 474
TaqII GACCGA 1 cut(s) 284
TasI AATT 1 cut(s) 481
Tru1I TTAA 4 cut(s) 305, 356, 480, 568
Tru9I TTAA 4 cut(s) 305, 356, 480, 568
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 288, 425, 458
TspGWI ACGGA 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 101
XspI CTAG 5 cut(s) 44, 102, 212, 240, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.