FvH4_5g12300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002180
Physical Location & Seq
Reverse (-)
6915040 .. 6915821
782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12300.t1

Sequence Viewer

Length: 336 bp
ATGGAGATTGCTTCACACAAAGGGGGAGAAAGTGAAGCCTCTGTTACTGTCGTCGGACACCAAGGAAGGAATACTGCTTGGCTTTCACAGTATAAATACCTCAACCCGTATTTTGCACTTGCAGAGTTACCGAGAGAAGTAGAGAAGCAAAGGAGTTTAGCTAGATCAACAAGGCAGTCAATGCCTCTGCACTATCCAAGGTACAAAAAATCAGACTACGAGACCATGCCGGAGTGGAAGCTGGGTTGTCTGCTGAAAGAGTATGGGCTACAAGTGACCGGTGATGTTGAGCAGAAGCGGAAGTTTGCTATGGGAACTTTCCTGTGGTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.86

Weight (kDa)

9.24

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 65 - 110 5.3e-28 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 298
AfaI GTAC 1 cut(s) 203
AgeI ACCGGT 1 cut(s) 278
AluBI AGCT 2 cut(s) 161, 241
AluI AGCT 2 cut(s) 161, 241
Alw26I GTCTC 1 cut(s) 215
AsiGI ACCGGT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 2 cut(s) 162, 334
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 61, 197
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 61, 197
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 278
BsiSI CCGG 2 cut(s) 230, 279
BsmAI GTCTC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 61, 197
BssMI GATC 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 61, 197
Bst4CI ACNGT 2 cut(s) 49, 90
BstAPI GCANNNNNTGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 202
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 226
CviJI RGCY 5 cut(s) 38, 82, 161, 241, 268
CviKI_1 RGCY 5 cut(s) 38, 82, 161, 241, 268
CviQI GTAC 1 cut(s) 202
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 61, 197
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 61, 197
ErhI CCWWGG 2 cut(s) 61, 197
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 93, 227, 264, 311
FatI CATG 1 cut(s) 225
FspBI CTAG 2 cut(s) 162, 334
GsaI CCCAGC 1 cut(s) 245
HapII CCGG 2 cut(s) 230, 279
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 230, 279
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 56, 214
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 2 cut(s) 49, 90
HpyCH4V TGCA 3 cut(s) 116, 122, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 3 cut(s) 227, 243, 292
MaeI CTAG 2 cut(s) 162, 334
MaeIII GTNAC 3 cut(s) 43, 126, 274
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 3 cut(s) 49, 110, 195
MspI CCGG 2 cut(s) 230, 279
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 327
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 1 cut(s) 327
SetI ASST 4 cut(s) 102, 163, 203, 243
SinI GGWCC 1 cut(s) 327
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 162, 334
StyI CCWWGG 2 cut(s) 61, 197
TaaI ACNGT 2 cut(s) 49, 90
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 327
XspI CTAG 2 cut(s) 162, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.