Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Forward (+)

37990934 .. 37991437

Gene Structure 504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAGTGGAGGCGGCATGGAAGCGGTATCGTCTAGGCCACAAGAGGCAAATGGCCAGCAGAAGCGAGAGAGGTGTAGTGGCTATTTTCAGATGCCTCTGCACTATCCAAGGTACAAAAAATGGGACTACGAGATCATGCCGGAATGGAAGCTGGATTGTCTGCTTAAACAGTATGGACTTCAAGTCACTGGAGATGTTGAGCAGAAGAGGAAGTTTGCTATGGGAACTTTCTTGTGGTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.54

Weight (kDa)

8.98

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	35 - 80	2.3e-28	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 23
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	182
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AoxI	GGCC	2 cut(s)	35, 52
BalI	TGGCCA	1 cut(s)	54
BfaI	CTAG	2 cut(s)	33, 244
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
BmeRI	GACNNNNNGTC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	37, 54
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	37, 54
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	12, 23
BspANI	GGCC	2 cut(s)	37, 54
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	37, 54
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	16, 136
CviJI	RGCY	4 cut(s)	37, 54, 81, 151
CviKI_1	RGCY	4 cut(s)	37, 54, 81, 151
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	200
Eam1105I	GACNNNNNGTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	19, 139
FaiI	YATR	4 cut(s)	17, 137, 174, 221
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	15, 135
Fnu4HI	GCNGC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	2 cut(s)	33, 244
GluI	GCNGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	37, 54
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	2 cut(s)	19, 139
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	19, 139
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	68, 137, 153, 174
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	33, 244
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MnlI	CCTC	4 cut(s)	37, 63, 105, 201
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	54
MspI	CCGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	19, 139
NmuCI	GTSAC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	132
SetI	ASST	3 cut(s)	74, 113, 153
SfaNI	GCATC	1 cut(s)	81
SsiI	CCGC	2 cut(s)	12, 23
SspMI	CTAG	2 cut(s)	33, 244
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	193
XspI	CTAG	2 cut(s)	33, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.