Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007783.1

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Forward (+)

5422 .. 5664

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007783.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgagtggaggcggcatggaatcggtgtcgacgtctaggcatcaacagaatggccatcacagcagcaagctatgtgggtattttcagatgcctctgcactatccaaggtacaccaaatcggactacgagaccatgccggagtggaggcttgactgtttgcttaaagagtatgggctgccgatctccggagacgttgagcagaagaagaagtttgccatgggagccttcttgtggtcgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.25

Weight (kDa)

7.81

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	110, 239
AfiI	CCNNNNNNNGG	2 cut(s)	185, 231
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	122, 183
Aor13HI	TCCGGA	1 cut(s)	185
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	63, 175
BalI	TGGCCA	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	75, 162
BccI	CCATC	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	122, 183
BfaI	CTAG	2 cut(s)	36, 241
BisI	GCNGC	3 cut(s)	13, 64, 176
BlsI	GCNGC	3 cut(s)	14, 65, 177
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	2 cut(s)	49, 78
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	104, 216
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 231
BseAI	TCCGGA	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	104, 216
BseLI	CCNNNNNNNGG	2 cut(s)	185, 231
BseXI	GCAGC	2 cut(s)	75, 162
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	137, 186
BslI	CCNNNNNNNGG	2 cut(s)	185, 231
BsmAI	GTCTC	2 cut(s)	122, 183
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	104, 216
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	104, 216
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	216
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	122, 183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 221
BstV1I	GCAGC	2 cut(s)	75, 162
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	109, 238
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	16, 133, 217
CviJI	RGCY	5 cut(s)	54, 70, 148, 175, 224
CviKI_1	RGCY	5 cut(s)	54, 70, 148, 175, 224
CviQI	GTAC	2 cut(s)	109, 238
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	104, 216
Eco31I	GGTCTC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	104, 216
ErhI	CCWWGG	2 cut(s)	104, 216
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	3 cut(s)	19, 136, 220
FaiI	YATR	5 cut(s)	17, 73, 134, 171, 218
FatI	CATG	3 cut(s)	15, 132, 216
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	3 cut(s)	13, 64, 176
Fsp4HI	GCNGC	3 cut(s)	13, 64, 176
FspBI	CTAG	2 cut(s)	36, 241
GluI	GCNGC	3 cut(s)	13, 64, 176
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	137, 186
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	19, 136, 220
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	137, 186
Hpy166II	GTNNAC	2 cut(s)	30, 111
Hpy188I	TCNGA	2 cut(s)	87, 121
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	2 cut(s)	30, 111
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	32, 192
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 221
HpySE526I	ACGT	2 cut(s)	32, 192
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	19, 136, 220
Kpn2I	TCCGGA	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	150, 199
Lsp1109I	GCAGC	2 cut(s)	75, 162
LweI	GCATC	2 cut(s)	49, 78
MaeI	CTAG	2 cut(s)	36, 241
MaeII	ACGT	2 cut(s)	32, 192
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	214, 217
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MnlI	CCTC	2 cut(s)	102, 138
Mox20I	TGGCCA	1 cut(s)	54
MroI	TCCGGA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	54
MspI	CCGG	2 cut(s)	137, 186
MwoI	GCNNNNNNNGC	2 cut(s)	60, 221
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	19, 136, 220
NlaIV	GGNNCC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	14, 65, 177
PspN4I	GGNNCC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	110, 239
RsaNI	GTAC	2 cut(s)	109, 238
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	13, 64, 176
Sau3AI	GATC	1 cut(s)	180
SetI	ASST	4 cut(s)	35, 72, 110, 195
SfaNI	GCATC	2 cut(s)	49, 78
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	2 cut(s)	36, 241
StyI	CCWWGG	2 cut(s)	104, 216
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	2 cut(s)	35, 195
TaqI	TCGA	1 cut(s)	29
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	2 cut(s)	63, 175
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	2 cut(s)	36, 241
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.