Rh7AG151700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002180
Physical Location & Seq
Forward (+)
12272640 .. 12272900
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG151700.1

Sequence Viewer

Length: 261 bp
ATGAAGATCATGAGTACTGCAAACCATGTTTTCGCTATGCCCCGGCTGGGATCAAACAACCAGACGAGCAACAACAGCAAGATATGTAGTTTCCAGATGCCGCTGCACTACCCGAGGTATCAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAAACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.01

Weight (kDa)

9.23

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 8.5e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 47, 194, 240
AgsI TTSAA 1 cut(s) 172
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 138, 181, 231, 242
ApeKI GCWGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 43
BisI GCNGC 2 cut(s) 101, 104
BlsI GCNGC 2 cut(s) 102, 105
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 194, 240
Bse1I ACTGG 2 cut(s) 162, 188
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 41, 113
BseLI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 162, 188
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 4 cut(s) 140, 183, 233, 244
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BsnI GGCC 4 cut(s) 140, 183, 233, 244
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 2 cut(s) 6, 50
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 140, 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 162, 188
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
Bst4CI ACNGT 2 cut(s) 177, 252
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 9, 53
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 2 cut(s) 75, 230
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 140, 183, 233, 244
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 10, 26, 142
CviJI RGCY 5 cut(s) 46, 140, 183, 233, 244
CviKI_1 RGCY 5 cut(s) 46, 140, 183, 233, 244
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 231
FaeI CATG 3 cut(s) 13, 29, 145
FaiI YATR 8 cut(s) 11, 27, 38, 85, 135, 143, 180, 255
FatI CATG 3 cut(s) 9, 25, 141
Fnu4HI GCNGC 2 cut(s) 101, 104
Fsp4HI GCNGC 2 cut(s) 101, 104
GluI GCNGC 2 cut(s) 101, 104
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 140, 183, 233, 244
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 13, 29, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 2 cut(s) 177, 252
HpyCH4V TGCA 3 cut(s) 20, 106, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 230
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 13, 29, 145
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 7 cut(s) 32, 56, 74, 107, 143, 159, 201
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 2 cut(s) 16, 136
MnlI CCTC 5 cut(s) 108, 130, 176, 194, 207
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 75, 230
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 3 cut(s) 13, 29, 145
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 2 cut(s) 102, 105
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 43
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 177, 252
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.