Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

13732232 .. 13733097

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGCGGAGGCGGCATGGAATCGGTGTCGAGTAGGCATCAACAGAATGGTCGTCACAGCAGCGAGCGATGTGGGTATTTTCAGATGCCTCTGCACTATCCAAGGTACACCAAATCGGACTACGAGACCATGCCGGAGTGGAGGCTCGACTGTTTGCTTAAAGAGTATGGACTGCCGATCATCGGAGACGTTGAGCAGAAGAGGAAGTTTGCTATGGGAGCCTTCTTGTGGTCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.27

Weight (kDa)

7.8

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	33 - 78	4.5e-30	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 12
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	182, 228
Alw26I	GTCTC	2 cut(s)	119, 180
ApeKI	GCWGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	119, 180
BfaI	CTAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	13, 61
BlsI	GCNGC	2 cut(s)	14, 62
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	46, 75
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 228
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	182, 228
BseXI	GCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	182, 228
BsmAI	GTCTC	2 cut(s)	119, 180
BsmBI	CGTCTC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	6, 12
BspLI	GGNNCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	119, 180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 218
BstV1I	GCAGC	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	16, 130
CviJI	RGCY	2 cut(s)	145, 221
CviKI_1	RGCY	2 cut(s)	145, 221
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	2 cut(s)	19, 133
FaiI	YATR	4 cut(s)	17, 131, 168, 215
FatI	CATG	2 cut(s)	15, 129
Fnu4HI	GCNGC	2 cut(s)	13, 61
Fsp4HI	GCNGC	2 cut(s)	13, 61
FspBI	CTAG	1 cut(s)	238
GluI	GCNGC	2 cut(s)	13, 61
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	2 cut(s)	19, 133
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	84, 118, 185
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 218
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	19, 133
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	46, 75
MaeI	CTAG	1 cut(s)	238
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	211
MnlI	CCTC	3 cut(s)	99, 135, 195
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	12, 218
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	19, 133
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	14, 62
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	13, 61
Sau3AI	GATC	1 cut(s)	177
SetI	ASST	2 cut(s)	107, 192
SfaNI	GCATC	2 cut(s)	46, 75
SgeI	CNNG	8 cut(s)	28, 42, 76, 114, 136, 142, 146, 158
SsiI	CCGC	2 cut(s)	6, 12
SspMI	CTAG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	29, 147
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.