Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

13728259 .. 13728872

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTGTGGAGGCAGCTTGGAATCGATAACCATGGTGTCCATGACACAAGAAGAAGTGAATGGACAACAGAAGAGGGAGCGACACCAGAATTTCCAGATGCCTCTACACTATCCAAGGTACAAGAAATCGGACTATGAGACGATGCCGGAGTGGAAGCTAGATTGTTTGCTTAAATCGTATGGGCTACCAATCACTGGTGATGTTGAAGAGAAGAGGAAATCTGCCATGGGACACTTCTTATGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.64

Weight (kDa)

6.82

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	37 - 82	3e-28	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	2 cut(s)	15, 157
AluI	AGCT	2 cut(s)	15, 157
Alw26I	GTCTC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
BmsI	GCATC	2 cut(s)	87, 132
Bsa29I	ATCGAT	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	30, 113, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	30, 113, 225
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	131
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	243
Bsp19I	CCATGG	2 cut(s)	30, 225
BspDI	ATCGAT	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	30, 113, 225
BssT1I	CCWWGG	3 cut(s)	30, 113, 225
Bst6I	CTCTTC	3 cut(s)	65, 201, 206
BstDSI	CCRYGG	2 cut(s)	30, 225
BstMAI	GTCTC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	23
BtgI	CCRYGG	2 cut(s)	30, 225
BtsIMutI	CAGTG	1 cut(s)	192
ClaI	ATCGAT	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	3 cut(s)	31, 40, 226
CviJI	RGCY	3 cut(s)	15, 157, 184
CviKI_1	RGCY	3 cut(s)	15, 157, 184
CviQI	GTAC	1 cut(s)	118
Eam1104I	CTCTTC	3 cut(s)	65, 201, 206
EarI	CTCTTC	3 cut(s)	65, 201, 206
Eco130I	CCWWGG	3 cut(s)	30, 113, 225
EcoT14I	CCWWGG	3 cut(s)	30, 113, 225
ErhI	CCWWGG	3 cut(s)	30, 113, 225
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	34, 43, 229
FaiI	YATR	6 cut(s)	32, 41, 135, 180, 227, 241
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	30, 39, 225
Fnu4HI	GCNGC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	13
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	3 cut(s)	34, 43, 229
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	34, 43, 229
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	98, 107, 159, 180
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	87, 132
MaeI	CTAG	1 cut(s)	158
MboII	GAAGA	4 cut(s)	62, 82, 218, 223
MluCI	AATT	1 cut(s)	88
MnlI	CCTC	3 cut(s)	66, 111, 207
MseI	TTAA	2 cut(s)	171, 247
MspI	CCGG	1 cut(s)	146
NcoI	CCATGG	2 cut(s)	30, 225
NlaIII	CATG	3 cut(s)	34, 43, 229
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	171, 247
SatI	GCNGC	1 cut(s)	13
SetI	ASST	3 cut(s)	17, 119, 159
SfaNI	GCATC	2 cut(s)	87, 132
Sse9I	AATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	158
StyI	CCWWGG	3 cut(s)	30, 113, 225
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	171, 247
Tru9I	TTAA	2 cut(s)	171, 247
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	12
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.