Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

11753458 .. 11754406

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGTACTGGAACTGGCCTTAGCAACCATGCCTTCGCTATGCCCCGGCTCGGAGGACATGATCAAACCAGTAAGAACAACACCACCTGTCAGTTCCAGATGCCTCTGCACTACCCGAGGTACCAGAAGCGCGACTACGAGACCATGCCGGAGTGGAAACTGGACTGCCTTCTGAAACAGTATGGCCTGCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCCATGGGGGCCTTCCTTTGGCCTTCCCAGTACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.1

Weight (kDa)

9.0

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	132
AfaI	GTAC	3 cut(s)	7, 122, 257
AfiI	CCNNNNNNNGG	3 cut(s)	50, 197, 243
Alw26I	GTCTC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	115
AoxI	GGCC	4 cut(s)	16, 184, 234, 245
Asp718I	GGTACC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	233
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	46
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	122, 235
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	44, 116, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 197, 243
Bse1I	ACTGG	6 cut(s)	13, 19, 69, 165, 191, 253
BseDI	CCNNGG	3 cut(s)	44, 116, 228
BseLI	CCNNNNNNNGG	3 cut(s)	50, 197, 243
BseNI	ACTGG	6 cut(s)	13, 19, 69, 165, 191, 253
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	4 cut(s)	18, 186, 236, 247
BshNI	GGYRCC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	2 cut(s)	46, 149
BslI	CCNNNNNNNGG	3 cut(s)	50, 197, 243
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	18, 186, 236, 247
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	4 cut(s)	18, 186, 236, 247
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	122, 235
BspT107I	GGYRCC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	6 cut(s)	13, 19, 69, 165, 191, 253
BssECI	CCNNGG	3 cut(s)	44, 116, 228
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	18, 186, 236, 247
BtgI	CCRYGG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	6, 121, 256
CviAII	CATG	4 cut(s)	29, 59, 145, 229
CviJI	RGCY	5 cut(s)	18, 49, 186, 236, 247
CviKI_1	RGCY	5 cut(s)	18, 49, 186, 236, 247
CviQI	GTAC	3 cut(s)	6, 121, 256
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	32, 62, 148, 232
FaiI	YATR	6 cut(s)	30, 41, 60, 146, 183, 230
FatI	CATG	4 cut(s)	28, 58, 144, 228
FbaI	TGATCA	1 cut(s)	61
GlaI	GCGC	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	18, 186, 236, 247
HapII	CCGG	2 cut(s)	46, 149
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	32, 62, 148, 232
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	46, 149
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	53, 174
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	4 cut(s)	43, 179, 247, 258
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	32, 62, 148, 232
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	59, 82, 100, 110, 137, 146, 162, 200, 204
LweI	GCATC	1 cut(s)	90
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	47, 111, 114, 210
MspI	CCGG	2 cut(s)	46, 149
MspR9I	CCNGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	32, 62, 148, 232
NlaIV	GGNNCC	2 cut(s)	122, 235
PflMI	CCANNNNNTGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	122, 235
PspPI	GGNCC	1 cut(s)	234
RsaI	GTAC	3 cut(s)	7, 122, 257
RsaNI	GTAC	3 cut(s)	6, 121, 256
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	2 cut(s)	89, 122
SfaNI	GCATC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	180
TatI	WGTACW	1 cut(s)	5
Van91I	CCANNNNNTGG	1 cut(s)	197
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.