Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

13729724 .. 13730396

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGTGGAACGGGATCGATGCCGTCTAGGGCACAAGAACCAAACGGACAGCACAAGAGAGAGCGATGTGAGTATTTTCAGATGCCCCTGCACTATCCAAGGTACAAGAGATCCGACTACGAGACCATGCCGGAGTGGAAGCTCGACTGTTTGCTCAAATCGTATGGGCTACCGATCAACGGAGATGTTGAAGAGAGGAGGATGTCAGCCATAGGAAACTTTCTGTGGCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

9.27

Weight (kDa)

7.81

Isoelectric Point (pI)

82.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	32 - 77	8.6e-26	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	22, 105
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	22, 105
BaeGI	GKGCMC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	27, 235
BmsI	GCATC	2 cut(s)	9, 72
Bsa29I	ATCGAT	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	14, 110, 174
BspDI	ATCGAT	1 cut(s)	17
BspPI	GGATC	2 cut(s)	22, 105
BspTNI	GGTCTC	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	3 cut(s)	14, 110, 174
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	3 cut(s)	17, 113, 177
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	14, 110, 174
BstSLI	GKGCMC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	17
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	3 cut(s)	142, 169, 209
CviKI_1	RGCY	3 cut(s)	142, 169, 209
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	3 cut(s)	16, 112, 176
DpnII	GATC	3 cut(s)	14, 110, 174
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	128, 165, 212, 231
FatI	CATG	1 cut(s)	126
FokI	GGATG	1 cut(s)	214
FspBI	CTAG	2 cut(s)	27, 235
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	130
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	81, 115
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	14, 110, 174
LpnPI	CCDG	2 cut(s)	101, 144
LweI	GCATC	2 cut(s)	9, 72
MaeI	CTAG	2 cut(s)	27, 235
MalI	GATC	3 cut(s)	16, 112, 176
MboI	GATC	3 cut(s)	14, 110, 174
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	189, 192
MspI	CCGG	1 cut(s)	131
NdeII	GATC	3 cut(s)	14, 110, 174
NlaIII	CATG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
Sau3AI	GATC	3 cut(s)	14, 110, 174
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	2 cut(s)	104, 144
SfaNI	GCATC	2 cut(s)	9, 72
SspMI	CTAG	2 cut(s)	27, 235
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	17, 144
TspGWI	ACGGA	2 cut(s)	60, 195
XspI	CTAG	2 cut(s)	27, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.