RLG00000004111

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002180
Physical Location & Seq
Reverse (-)
56301190 .. 56301695
506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004111

Sequence Viewer

Length: 306 bp
ATGAGTACTGCGAACCATGTTTTCGCTATGCCCCGGCTGGGATCAAACAACCAGACGAGCAACAACAGCAAGGTGTGTAGTTTCCAGATGCCTCTGCACTACCCGAGGTACCAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAAACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAAAACCAAAAGAAAAAAGGGAAGGGCAAAAAGCAAATGGAAAAAGGCTACAAAGAAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

9.84

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 34 - 79 1.3e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 185
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 2 cut(s) 7, 110
AfiI CCNNNNNNNGG 3 cut(s) 38, 185, 231
AgsI TTSAA 1 cut(s) 163
AlwI GGATC 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 4 cut(s) 129, 172, 222, 233
ApoI RAATTY 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 103
BanI GGYRCC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 110, 223
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 32, 104
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 185, 231
Bse1I ACTGG 2 cut(s) 153, 179
Bse3DI GCAATG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 32, 104
BseLI CCNNNNNNNGG 3 cut(s) 38, 185, 231
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 153, 179
BseYI CCCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 4 cut(s) 131, 174, 224, 235
BshNI GGYRCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 38, 185, 231
BsnI GGCC 4 cut(s) 131, 174, 224, 235
BsoBI CYCGRG 1 cut(s) 103
Bsp143I GATC 1 cut(s) 41
BspANI GGCC 4 cut(s) 131, 174, 224, 235
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 110, 223
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 153, 179
BssECI CCNNGG 2 cut(s) 32, 104
BssMI GATC 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 168
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 2 cut(s) 66, 221
BstSCI CCNGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 131, 174, 224, 235
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 6, 109
CviAII CATG 2 cut(s) 17, 133
CviJI RGCY 6 cut(s) 37, 131, 174, 224, 235, 288
CviKI_1 RGCY 6 cut(s) 37, 131, 174, 224, 235, 288
CviQI GTAC 2 cut(s) 6, 109
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 222
FaeI CATG 2 cut(s) 20, 136
FaiI YATR 5 cut(s) 18, 29, 126, 134, 171
FatI CATG 2 cut(s) 16, 132
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 4 cut(s) 131, 174, 224, 235
HapII CCGG 1 cut(s) 34
Hin1II CATG 2 cut(s) 20, 136
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 85, 160
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 235, 246, 256
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 97, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 221
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 20, 136
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 23, 47, 65, 98, 125, 134, 150, 192
LweI GCATC 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 1 cut(s) 127
MluCI AATT 1 cut(s) 299
MnlI CCTC 6 cut(s) 99, 102, 121, 167, 185, 198
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 66, 221
NciI CCSGG 1 cut(s) 34
NdeII GATC 1 cut(s) 41
NlaIII CATG 2 cut(s) 20, 136
NlaIV GGNNCC 2 cut(s) 110, 223
NmuCI GTSAC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 110, 223
PspPI GGNCC 1 cut(s) 222
RsaI GTAC 2 cut(s) 7, 110
RsaNI GTAC 2 cut(s) 6, 109
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 34
SetI ASST 2 cut(s) 75, 110
SfaNI GCATC 1 cut(s) 78
Sse9I AATT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 168
TasI AATT 1 cut(s) 299
TatI WGTACW 1 cut(s) 5
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 185
XapI RAATTY 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.