Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007783.1

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Forward (+)

15208 .. 15444

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007783.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgagtggaatgggagcgatgtcgtcttggtcacaagaaccaaatggacagcacaagagagagcgatgcgagtattttcagatgcccctgcactatccaaggtacaagaaatccgactatgagaccatgccggagtggaagcttgactgtttgcttagatcttatgggctaccgattactggagatgttgaagagaggaggaagtcagccatgggaaactttctgtggaataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

78

Amino Acids

9.3

Weight (kDa)

7.78

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	158
BmsI	GCATC	2 cut(s)	56, 72
BpmI	CTGGAG	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	98, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	98, 210
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	158
Bsp19I	CCATGG	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	98, 210
BssMI	GATC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	98, 210
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	2 cut(s)	32, 79
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	127, 211
CviJI	RGCY	3 cut(s)	142, 169, 209
CviKI_1	RGCY	3 cut(s)	142, 169, 209
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	98, 210
Eco31I	GGTCTC	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	98, 210
ErhI	CCWWGG	2 cut(s)	98, 210
FaeI	CATG	2 cut(s)	130, 214
FaiI	YATR	4 cut(s)	120, 128, 165, 212
FatI	CATG	2 cut(s)	126, 210
FspBI	CTAG	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	130, 214
HindIII	AAGCTT	1 cut(s)	140
HpaII	CCGG	1 cut(s)	131
Hpy188I	TCNGA	2 cut(s)	81, 115
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	130, 214
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	101, 144, 165
LweI	GCATC	2 cut(s)	56, 72
MaeI	CTAG	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	189, 192
MspI	CCGG	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	130, 214
NmuCI	GTSAC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	158
SetI	ASST	2 cut(s)	104, 144
SfaNI	GCATC	2 cut(s)	56, 72
SspMI	CTAG	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	98, 210
TaaI	ACNGT	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.