Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

37762142 .. 37762664

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGTAACAAAGATAGATATCCCCGATCCCTACTTTCTAAAATAAAGGAGGTACGGAGGGACTTCTCTGAGGTTGGATGTATTGTGGATGATTGCAAAGCATATTTGCGGGCAATTTCTTCTTTTAATTTATGCTCTATCTATCGTGAAGCAAATGATACCCATAGATTGGCACACCTTGCTAGCATTGAGTTCTTAGACGACTATTGGTTAGACAAGGCTCTTGTGATTATCCATGATGCACTATATGAGGACGCTTGTACTAGTACTCGAGGTGTAGACGTGGAGTTGAACCTCACAGTTGATAAAGTAATCTGGGGTTCACATCCAAAACCAATTGGCAATGGATGGAGTGGCCTAAACCCTTATAAACCCACTAGCAATGTCCCATTTTTCCCATGTGGGATGTATATATTCTCAACACGCCCCCGCACGTGTGGCGAATTTTCAAGCCATACACGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

6.94

Isoelectric Point (pI)

22.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	109, 430
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	443
AcvI	CACGTG	2 cut(s)	435, 461
AfaI	GTAC	3 cut(s)	54, 262, 268
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	2 cut(s)	434, 458
AgsI	TTSAA	2 cut(s)	292, 450
AhlI	ACTAGT	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	270
BbrPI	CACGTG	2 cut(s)	435, 461
BccI	CCATC	1 cut(s)	342
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	3 cut(s)	183, 264, 378
BmcAI	AGTACT	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	186
BsaAI	YACGTR	2 cut(s)	435, 461
BsaBI	GATNNNNATC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	2 cut(s)	349, 388
Bse8I	GATNNNNATC	1 cut(s)	18
BseGI	GGATG	5 cut(s)	83, 94, 325, 353, 411
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	2 cut(s)	349, 388
BseMII	CTCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	74, 371
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	74, 371
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	2 cut(s)	109, 430
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	21
BsrDI	GCAATG	2 cut(s)	349, 388
BssMI	GATC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBAI	YACGTR	2 cut(s)	435, 461
BstC8I	GCNNGC	2 cut(s)	111, 184
BstDEI	CTNAG	2 cut(s)	69, 196
BstF5I	GGATG	5 cut(s)	83, 94, 325, 353, 411
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 438
BstXI	CCANNNNNNTGG	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	83, 94, 325, 353, 411
Cac8I	GCNNGC	2 cut(s)	111, 184
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	53, 261, 267
CviAII	CATG	2 cut(s)	236, 399
CviJI	RGCY	3 cut(s)	221, 357, 453
CviKI_1	RGCY	3 cut(s)	221, 357, 453
CviQI	GTAC	3 cut(s)	53, 261, 267
DdeI	CTNAG	2 cut(s)	69, 196
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	20
Eco72I	CACGTG	2 cut(s)	435, 461
Eco88I	CYCGRG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	20
FaeI	CATG	2 cut(s)	239, 402
FaqI	GGGAC	2 cut(s)	74, 371
FatI	CATG	2 cut(s)	235, 398
FauI	CCCGC	2 cut(s)	102, 437
FblI	GTMKAC	1 cut(s)	279
FokI	GGATG	5 cut(s)	90, 101, 312, 360, 418
FspBI	CTAG	3 cut(s)	183, 264, 378
HaeIII	GGCC	1 cut(s)	357
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	239, 402
Hpy166II	GTNNAC	2 cut(s)	280, 323
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	280, 323
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	3 cut(s)	282, 434, 460
HpyCH4V	TGCA	2 cut(s)	96, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 438
HpyF3I	CTNAG	2 cut(s)	69, 196
HpySE526I	ACGT	3 cut(s)	282, 434, 460
Hsp92II	CATG	2 cut(s)	239, 402
Kzo9I	GATC	1 cut(s)	26
LpnPI	CCDG	1 cut(s)	301
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	3 cut(s)	183, 264, 378
MaeII	ACGT	3 cut(s)	282, 434, 460
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	336
MluCI	AATT	4 cut(s)	114, 127, 336, 443
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	43, 51, 64, 244, 266, 305
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	179, 438
NdeII	GATC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	239, 402
PaeR7I	CTCGAG	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	169
PmaCI	CACGTG	2 cut(s)	435, 461
PmlI	CACGTG	2 cut(s)	435, 461
Ppu21I	YACGTR	2 cut(s)	435, 461
PsiI	TTATAA	1 cut(s)	369
PspCI	CACGTG	2 cut(s)	435, 461
PspXI	VCTCGAGB	1 cut(s)	270
RsaI	GTAC	3 cut(s)	54, 262, 268
RsaNI	GTAC	3 cut(s)	53, 261, 267
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	268
SetI	ASST	8 cut(s)	54, 75, 180, 277, 285, 297, 437, 463
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	4 cut(s)	114, 127, 336, 443
SsiI	CCGC	2 cut(s)	109, 430
SspMI	CTAG	3 cut(s)	183, 264, 378
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	3 cut(s)	285, 437, 463
TaqI	TCGA	1 cut(s)	271
TasI	AATT	4 cut(s)	114, 127, 336, 443
TatI	WGTACW	2 cut(s)	260, 266
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	3 cut(s)	183, 264, 378
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.