Rh1BG246200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002180
Physical Location & Seq
Reverse (-)
37271188 .. 37272108
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG246200.1

Sequence Viewer

Length: 375 bp
ATGAGTGGAGGCGGCATGGAATCGGTGTCGACGTCTAGGCATCAACAGAATGGTCATCACAGCAGCAACCTATGTGGGTATTTTCAGATGCCTCTGCACTATCCAAGGTACACCAAATCGGACTACGAGACCATGCCGGAGTGGAGGCTCGACTGTTTGCTTAAAGAGTATGGGCTGCCAATCTCCGGAGACGTTGAGCAGAAGAGGAAGTTTGCCATGGGAGCCTTCTTGTGGTCCACGGGGAGGACATGGTGGCAAAGACCCACTCAGAATAACAGGCATATCATTTTAAAGACTTATAACGAACCAATGCGGCTCCTCCACCTGAAACGCCAACGCCCAACATCCAGCGCTACAAACTGCGCAACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.49

Weight (kDa)

9.71

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 34 - 79 7.6e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AatII GACGTC 1 cut(s) 35
Acc16I TGCGCA 1 cut(s) 364
AccI GTMKAC 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 2 cut(s) 12, 313
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 110
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 185, 231, 243
Alw26I GTCTC 2 cut(s) 122, 183
Aor13HI TCCGGA 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 63, 175
AspLEI GCGC 2 cut(s) 353, 365
AspS9I GGNCC 1 cut(s) 234
AvaII GGWCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 75, 162
BcoDI GTCTC 2 cut(s) 122, 183
BfaI CTAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 354
BisI GCNGC 4 cut(s) 13, 64, 176, 314
BlsI GCNGC 4 cut(s) 14, 65, 177, 315
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 223, 317
BmsI GCATC 2 cut(s) 49, 78
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 104, 216, 237
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 231, 243
BseAI TCCGGA 1 cut(s) 185
BseDI CCNNGG 3 cut(s) 104, 216, 237
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 185, 231, 243
BseMII CTCAG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 75, 162
BsgI GTGCAG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 137, 186
BslI CCNNNNNNNGG 3 cut(s) 185, 231, 243
BsmAI GTCTC 2 cut(s) 122, 183
BsmBI CGTCTC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 185
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 2 cut(s) 12, 313
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 223, 317
BspTNI GGTCTC 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 104, 216, 237
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 104, 216
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 2 cut(s) 216, 237
BstF5I GGATG 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 353, 365
BstMAI GTCTC 2 cut(s) 122, 183
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 75, 162
BtgI CCRYGG 2 cut(s) 216, 237
BtsCI GGATG 1 cut(s) 344
CfoI GCGC 2 cut(s) 353, 365
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 4 cut(s) 16, 133, 217, 249
CviJI RGCY 4 cut(s) 148, 175, 224, 316
CviKI_1 RGCY 4 cut(s) 148, 175, 224, 316
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 267
DraI TTTAAA 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 104, 216
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 104, 216
ErhI CCWWGG 2 cut(s) 104, 216
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 4 cut(s) 19, 136, 220, 252
FaiI YATR 8 cut(s) 17, 73, 134, 171, 218, 250, 282, 300
FatI CATG 4 cut(s) 15, 132, 216, 248
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 13, 64, 176, 314
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 4 cut(s) 13, 64, 176, 314
FspBI CTAG 1 cut(s) 36
FspI TGCGCA 1 cut(s) 364
GlaI GCGC 2 cut(s) 352, 364
GluI GCNGC 4 cut(s) 13, 64, 176, 314
HaeII RGCGCY 1 cut(s) 354
HapII CCGG 2 cut(s) 137, 186
HhaI GCGC 2 cut(s) 353, 365
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 4 cut(s) 19, 136, 220, 252
Hin6I GCGC 2 cut(s) 351, 363
HinP1I GCGC 2 cut(s) 351, 363
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 137, 186
Hpy166II GTNNAC 3 cut(s) 30, 111, 237
Hpy188I TCNGA 3 cut(s) 87, 121, 270
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 3 cut(s) 30, 111, 237
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 32, 192
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 32, 192
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 4 cut(s) 19, 136, 220, 252
HspAI GCGC 2 cut(s) 351, 363
Kpn2I TCCGGA 1 cut(s) 185
LmnI GCTCC 2 cut(s) 221, 321
LpnPI CCDG 5 cut(s) 150, 199, 262, 338, 361
Lsp1109I GCAGC 2 cut(s) 75, 162
LweI GCATC 2 cut(s) 49, 78
MaeI CTAG 1 cut(s) 36
MaeII ACGT 2 cut(s) 32, 192
MboII GAAGA 1 cut(s) 214
MnlI CCTC 5 cut(s) 102, 138, 198, 237, 329
MroI TCCGGA 1 cut(s) 185
MseI TTAA 2 cut(s) 162, 290
MspI CCGG 2 cut(s) 137, 186
MwoI GCNNNNNNNGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 216
NlaIII CATG 4 cut(s) 19, 136, 220, 252
NlaIV GGNNCC 2 cut(s) 223, 317
NsbI TGCGCA 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 4 cut(s) 14, 65, 177, 315
PsiI TTATAA 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 223, 317
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 2 cut(s) 162, 290
SatI GCNGC 4 cut(s) 13, 64, 176, 314
Sau96I GGNCC 1 cut(s) 234
SetI ASST 5 cut(s) 35, 72, 110, 195, 327
SfaNI GCATC 2 cut(s) 49, 78
SinI GGWCC 1 cut(s) 234
SsiI CCGC 2 cut(s) 12, 313
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 2 cut(s) 104, 216
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 35, 195
TaqI TCGA 2 cut(s) 29, 150
TauI GCSGC 2 cut(s) 15, 316
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 2 cut(s) 162, 290
Tru9I TTAA 2 cut(s) 162, 290
TseI GCWGC 2 cut(s) 63, 175
VpaK11BI GGWCC 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 1 cut(s) 36
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.