AT5G41761

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002180
Physical Location & Seq
Forward (+)
16711042 .. 16712069
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41761.1

Sequence Viewer

Length: 306 bp
ATGGGAATCAAATTCAGCCAAGGTCCTTCGAATACAACCATTCACAACAGAAGTCATCAAGATGGTGAGGATCAAAGGAACGAGACGGCGACGAAGATCAATCATGACAAGCCTCAAAATCAATCAAGTAGCTTTCAGATTCCACTTCATTATCCAAAGTATACAAAGAGTGATTATGAGAAAATGCCAGAGTGGCAATTGGATCGGCTTCTGAGAGAGTACGGCTTGCCGGTTATCGGAGATTCTTACGAGAAGAGGAAATTTGCCATCGGAGCATTTCTCTGGTCGTCGGAGAACGAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.83

Weight (kDa)

6.5

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 51 - 96 6e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 161
AclWI GGATC 2 cut(s) 78, 210
AcsI RAATTY 2 cut(s) 11, 260
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 2 cut(s) 78, 210
ApoI RAATTY 2 cut(s) 11, 260
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 303
BccI CCATC 2 cut(s) 56, 275
BceAI ACGGC 2 cut(s) 102, 238
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 304
BglI GCCNNNNNGGC 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 264, 296
Bpu14I TTCGAA 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 3 cut(s) 70, 96, 202
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 103
BspPI GGATC 2 cut(s) 78, 210
BspT104I TTCGAA 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 70, 96, 202
BssNAI GTATAC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 212
BstKTI GATC 3 cut(s) 73, 99, 205
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 70, 96, 202
BstMWI GCNNNNNNNGC 2 cut(s) 193, 272
BstZ17I GTATAC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 227
CciI TCATGA 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 18, 112, 132, 208, 225
CviKI_1 RGCY 5 cut(s) 18, 112, 132, 208, 225
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 72, 98, 204
DpnII GATC 3 cut(s) 70, 96, 202
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 107
FaiI YATR 3 cut(s) 105, 162, 177
FatI CATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 161
FspBI CTAG 1 cut(s) 304
HapII CCGG 1 cut(s) 230
Hin1II CATG 1 cut(s) 107
HinfI GANTC 3 cut(s) 6, 139, 242
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 5 cut(s) 138, 213, 239, 272, 292
Hpy188III TCNNGA 2 cut(s) 59, 104
Hpy8I GTNNAC 1 cut(s) 162
Hpy99I CGWCG 2 cut(s) 94, 292
HpyAV CCTTC 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 272
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 3 cut(s) 70, 96, 202
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 3 cut(s) 201, 243, 268
MaeI CTAG 1 cut(s) 304
MalI GATC 3 cut(s) 72, 98, 204
MboI GATC 3 cut(s) 70, 96, 202
MboII GAAGA 2 cut(s) 106, 265
MfeI CAATTG 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 11, 197, 260
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 61, 123, 249
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 193, 272
NdeII GATC 3 cut(s) 70, 96, 202
NlaIII CATG 1 cut(s) 107
NspV TTCGAA 1 cut(s) 29
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 3 cut(s) 6, 139, 242
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 60
Sau3AI GATC 3 cut(s) 70, 96, 202
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 303
SetI ASST 2 cut(s) 25, 134
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 3 cut(s) 11, 197, 260
SspMI CTAG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 29
TasI AATT 3 cut(s) 11, 197, 260
TfiI GAWTC 3 cut(s) 6, 139, 242
TspDTI ATGAA 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 11, 260
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.