Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000078.1

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Forward (+)

18515 .. 18766

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000078.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgagtactgcaaaccatgttttcgctatgccccggctgggatcaaataaccagacgagcaacaacagcaagatatgtagtttccagatgccgctgcactacccgaggtataagaagagtgactatgaggccatgcctgagtggaaactggactgcctcttgaaacagtatggcctcccagtcattggagatgtcaaccaaaagaggaagtttgcaatgggggccttcctttggccttcacagtatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.65

Weight (kDa)

9.23

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	3 cut(s)	38, 185, 231
AgsI	TTSAA	1 cut(s)	163
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	4 cut(s)	129, 172, 222, 233
ApeKI	GCWGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	34
BisI	GCNGC	2 cut(s)	92, 95
BlsI	GCNGC	2 cut(s)	93, 96
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	32, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 185, 231
Bse1I	ACTGG	2 cut(s)	153, 179
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	32, 104
BseLI	CCNNNNNNNGG	3 cut(s)	38, 185, 231
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	153, 179
BseXI	GCAGC	1 cut(s)	81
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	131, 174, 224, 235
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	38, 185, 231
BsnI	GGCC	4 cut(s)	131, 174, 224, 235
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	4 cut(s)	131, 174, 224, 235
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	153, 179
BssECI	CCNNGG	2 cut(s)	32, 104
BssMI	GATC	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	168, 243
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 221
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	131, 174, 224, 235
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	2 cut(s)	17, 133
CviJI	RGCY	5 cut(s)	37, 131, 174, 224, 235
CviKI_1	RGCY	5 cut(s)	37, 131, 174, 224, 235
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	222
FaeI	CATG	2 cut(s)	20, 136
FaiI	YATR	8 cut(s)	18, 29, 76, 111, 126, 134, 171, 246
FatI	CATG	2 cut(s)	16, 132
Fnu4HI	GCNGC	2 cut(s)	92, 95
Fsp4HI	GCNGC	2 cut(s)	92, 95
GluI	GCNGC	2 cut(s)	92, 95
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	131, 174, 224, 235
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	20, 136
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	85, 160
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	235, 246
HpyCH4III	ACNGT	2 cut(s)	168, 243
HpyCH4V	TGCA	3 cut(s)	11, 97, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 221
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	20, 136
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	7 cut(s)	23, 47, 65, 98, 134, 150, 192
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	127
MnlI	CCTC	5 cut(s)	99, 121, 167, 185, 198
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	66, 221
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	20, 136
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	93, 96
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SatI	GCNGC	2 cut(s)	92, 95
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	78
SsiI	CCGC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	168, 243
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.