Rh7CG156900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002180
Physical Location & Seq
Forward (+)
12875423 .. 12878272
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG156900.1

Sequence Viewer

Length: 261 bp
ATGAAGATCATGAGTACTGCAAACCATGTTTTCGCTATGCCCTGGCTGGGATCAAACAACCAGACGAGTAACAACAGCAAGATATGTAGTTTCCAGATGCCGCTGCACTACCCTAGGTATCAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAAACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAATCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.07

Weight (kDa)

8.98

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 1.3e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 47, 194, 240
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 41
AlwI GGATC 1 cut(s) 58
AoxI GGCC 4 cut(s) 138, 181, 231, 242
ApeKI GCWGC 1 cut(s) 103
AspA2I CCTAGG 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 101, 104
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 2 cut(s) 102, 105
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 194, 240
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 41, 113
BseLI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 4 cut(s) 140, 183, 233, 244
BslI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BsnI GGCC 4 cut(s) 140, 183, 233, 244
Bsp143I GATC 2 cut(s) 6, 50
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 140, 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 177, 252
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 9, 53
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 140, 183, 233, 244
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 10, 26, 142
CviJI RGCY 5 cut(s) 46, 140, 183, 233, 244
CviKI_1 RGCY 5 cut(s) 46, 140, 183, 233, 244
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 13, 29, 145
FaiI YATR 8 cut(s) 11, 27, 38, 85, 135, 143, 180, 255
FatI CATG 3 cut(s) 9, 25, 141
Fnu4HI GCNGC 2 cut(s) 101, 104
Fsp4HI GCNGC 2 cut(s) 101, 104
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 101, 104
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 140, 183, 233, 244
Hin1II CATG 3 cut(s) 13, 29, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 2 cut(s) 177, 252
HpyCH4V TGCA 3 cut(s) 20, 106, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 13, 29, 145
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 7 cut(s) 28, 32, 55, 74, 107, 143, 159
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 68, 128
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 2 cut(s) 16, 136
MnlI CCTC 4 cut(s) 130, 176, 194, 207
MspA1I CMGCKG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 3 cut(s) 13, 29, 145
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 2 cut(s) 102, 105
Psp6I CCWGG 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 43
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 177, 252
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.