RchiOBHm_Chr1g0358841

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002180
Physical Location & Seq
Reverse (-)
50836268 .. 50836904
637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58393

Sequence Viewer

Length: 243 bp
ATGAGTGGAGGCGGCATGGAATCGGTGTCGACGTCTAGGCATCAACAGAATGGCCATCACAGCAGCAAGCTATGTGGGTATTTTCAGATGCCTCTGCACTATCCAAGGTACACCAAATCGGACTACGAGACCATGCCGGAGTGGAGGCTCGAGTGTTTGCTTAAAGAGTATGGGCTGCCGATCTCCGGAGACGTTGAGCAGAAGAGGAAGTTTGCCATGGGAGCCTTCTTGTGGTCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.3

Weight (kDa)

7.81

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 34 - 79 2.4e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 110, 239
AfiI CCNNNNNNNGG 2 cut(s) 185, 231
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 122, 183
Ama87I CYCGRG 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 63, 175
AvaI CYCGRG 1 cut(s) 149
BalI TGGCCA 1 cut(s) 54
BbvI GCAGC 2 cut(s) 75, 162
BccI CCATC 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 122, 183
BfaI CTAG 2 cut(s) 36, 241
BisI GCNGC 3 cut(s) 13, 64, 176
BlsI GCNGC 3 cut(s) 14, 65, 177
BmeT110I CYCGRG 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 2 cut(s) 49, 78
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 104, 216
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 231
BseAI TCCGGA 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 104, 216
BseLI CCNNNNNNNGG 2 cut(s) 185, 231
BseXI GCAGC 2 cut(s) 75, 162
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 137, 186
BslI CCNNNNNNNGG 2 cut(s) 185, 231
BsmAI GTCTC 2 cut(s) 122, 183
BsmBI CGTCTC 1 cut(s) 183
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 149
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 54
BspEI TCCGGA 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 104, 216
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 104, 216
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 68
BstDSI CCRYGG 1 cut(s) 216
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 2 cut(s) 122, 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 60, 221
BstV1I GCAGC 2 cut(s) 75, 162
BsuRI GGCC 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 109, 238
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 3 cut(s) 16, 133, 217
CviJI RGCY 5 cut(s) 54, 70, 148, 175, 224
CviKI_1 RGCY 5 cut(s) 54, 70, 148, 175, 224
CviQI GTAC 2 cut(s) 109, 238
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 104, 216
Eco31I GGTCTC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 104, 216
ErhI CCWWGG 2 cut(s) 104, 216
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 19, 136, 220
FaiI YATR 5 cut(s) 17, 73, 134, 171, 218
FatI CATG 3 cut(s) 15, 132, 216
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 13, 64, 176
Fsp4HI GCNGC 3 cut(s) 13, 64, 176
FspBI CTAG 2 cut(s) 36, 241
GluI GCNGC 3 cut(s) 13, 64, 176
HaeIII GGCC 1 cut(s) 54
HapII CCGG 2 cut(s) 137, 186
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 19, 136, 220
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 137, 186
Hpy166II GTNNAC 2 cut(s) 30, 111
Hpy188I TCNGA 2 cut(s) 87, 121
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 30, 111
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 32, 192
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 221
HpySE526I ACGT 2 cut(s) 32, 192
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 19, 136, 220
Kpn2I TCCGGA 1 cut(s) 185
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 150, 199
Lsp1109I GCAGC 2 cut(s) 75, 162
LweI GCATC 2 cut(s) 49, 78
MaeI CTAG 2 cut(s) 36, 241
MaeII ACGT 2 cut(s) 32, 192
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 54
MnlI CCTC 3 cut(s) 102, 138, 198
Mox20I TGGCCA 1 cut(s) 54
MroI TCCGGA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 54
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 54
MspI CCGG 2 cut(s) 137, 186
MwoI GCNNNNNNNGC 2 cut(s) 60, 221
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 180
NlaIII CATG 3 cut(s) 19, 136, 220
NlaIV GGNNCC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 14, 65, 177
PspN4I GGNNCC 1 cut(s) 223
PspXI VCTCGAGB 1 cut(s) 149
RsaI GTAC 2 cut(s) 110, 239
RsaNI GTAC 2 cut(s) 109, 238
SalI GTCGAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 13, 64, 176
Sau3AI GATC 1 cut(s) 180
SetI ASST 4 cut(s) 35, 72, 110, 195
SfaNI GCATC 2 cut(s) 49, 78
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 1 cut(s) 12
SspMI CTAG 2 cut(s) 36, 241
StyI CCWWGG 2 cut(s) 104, 216
TaiI ACGT 2 cut(s) 35, 195
TaqI TCGA 2 cut(s) 29, 150
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseI GCWGC 2 cut(s) 63, 175
XhoI CTCGAG 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 29
XspI CTAG 2 cut(s) 36, 241
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.