RchiOBHm_Chr7g0195541

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002180
Physical Location & Seq
Forward (+)
13359077 .. 13359491
415 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17489

Sequence Viewer

Length: 261 bp
ATGAAGATCATGAGTACTGCAAACCATGTTTTCGCTATGCCCCGGCTGGGATCAAATAACCAGACGAGCAACAACAGCAAGATATGTAGTTTCCAGATGCCGGTGCACTACCCGAGGTATAAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAAACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.01

Weight (kDa)

9.39

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 5.6e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 4 cut(s) 47, 100, 194, 240
AgsI TTSAA 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 138, 181, 231, 242
ApaLI GTGCAC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 100, 194, 240
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 162, 188
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 41, 113
BseLI CCNNNNNNNGG 4 cut(s) 47, 100, 194, 240
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 162, 188
BseSI GKGCMC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 4 cut(s) 140, 183, 233, 244
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 43, 101
BslI CCNNNNNNNGG 4 cut(s) 47, 100, 194, 240
BsnI GGCC 4 cut(s) 140, 183, 233, 244
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 6, 50
BspANI GGCC 4 cut(s) 140, 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 162, 188
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
Bst4CI ACNGT 2 cut(s) 177, 252
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 9, 53
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 2 cut(s) 75, 230
BstSCI CCNGG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 108
BsuRI GGCC 4 cut(s) 140, 183, 233, 244
CciI TCATGA 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 15
CviAII CATG 3 cut(s) 10, 26, 142
CviJI RGCY 5 cut(s) 46, 140, 183, 233, 244
CviKI_1 RGCY 5 cut(s) 46, 140, 183, 233, 244
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 231
FaeI CATG 3 cut(s) 13, 29, 145
FaiI YATR 9 cut(s) 11, 27, 38, 85, 120, 135, 143, 180, 255
FatI CATG 3 cut(s) 9, 25, 141
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 140, 183, 233, 244
HapII CCGG 2 cut(s) 43, 101
Hin1II CATG 3 cut(s) 13, 29, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 2 cut(s) 43, 101
Hpy166II GTNNAC 2 cut(s) 106, 205
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 2 cut(s) 106, 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 2 cut(s) 177, 252
HpyCH4V TGCA 3 cut(s) 20, 106, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 230
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 13, 29, 145
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 8 cut(s) 32, 56, 74, 107, 114, 143, 159, 201
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 2 cut(s) 16, 136
MhlI GDGCHC 1 cut(s) 108
MnlI CCTC 5 cut(s) 108, 130, 176, 194, 207
MspI CCGG 2 cut(s) 43, 101
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 75, 230
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 3 cut(s) 13, 29, 145
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 108
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 177, 252
TatI WGTACW 1 cut(s) 14
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
VneI GTGCAC 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.