MD06G1100900.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002180
Physical Location & Seq
Reverse (-)
23754717 .. 23754992
276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1100900.v1.1.491

Sequence Viewer

Length: 276 bp
ATGAGTACCACTGAAACAGTCTTTAGCAACCACGCTTTCTCCATGCCCGCCGCTGGTGGGCTCCAAGTAAATGAGAAAACTAGCAAGAACAACACCCCATGCAACTTCCAGATGCCTCTGCACTATCCAAGGTACCGGAAGAGTGACTATGAGGGCATGCCTGAATGGAAACTGGACTGCCTTTTGCAGCAGTACGGCCTCCCAGTCATTGGGGATGTCAACCAAAAGAGGAAGTTTGCCATGGGAGCCTTCCTTTGGCCTTCACAATACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.47

Weight (kDa)

7.78

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 42 - 87 3.2e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 2 cut(s) 48, 51
AfaI GTAC 3 cut(s) 7, 134, 194
AfiI CCNNNNNNNGG 4 cut(s) 53, 57, 209, 255
AoxI GGCC 2 cut(s) 196, 257
ApeKI GCWGC 1 cut(s) 187
Asp718I GGTACC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 211
BfaI CTAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 51, 188
BlsI GCNGC 2 cut(s) 52, 189
BmiI GGNNCC 3 cut(s) 62, 134, 247
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 128, 240
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 57, 209, 255
Bse1I ACTGG 2 cut(s) 177, 203
BseDI CCNNGG 2 cut(s) 128, 240
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 4 cut(s) 53, 57, 209, 255
BseNI ACTGG 2 cut(s) 177, 203
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 2 cut(s) 198, 259
BshNI GGYRCC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 136
BslI CCNNNNNNNGG 4 cut(s) 53, 57, 209, 255
BsnI GGCC 2 cut(s) 198, 259
Bsp1286I GDGCHC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 48, 51
BspANI GGCC 2 cut(s) 198, 259
BspLI GGNNCC 3 cut(s) 62, 134, 247
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 2 cut(s) 177, 203
BssECI CCNNGG 2 cut(s) 128, 240
BssT1I CCWWGG 2 cut(s) 128, 240
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 48, 158
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 198, 259
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 48, 158
Csp6I GTAC 3 cut(s) 6, 133, 193
CviAII CATG 4 cut(s) 43, 99, 157, 241
CviJI RGCY 4 cut(s) 61, 198, 248, 259
CviKI_1 RGCY 4 cut(s) 61, 198, 248, 259
CviQI GTAC 3 cut(s) 6, 133, 193
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 128, 240
Eco24I GRGCYC 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 128, 240
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 128, 240
FaeI CATG 4 cut(s) 46, 102, 160, 244
FaiI YATR 5 cut(s) 44, 100, 150, 158, 242
FatI CATG 4 cut(s) 42, 98, 156, 240
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 51, 188
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 51, 188
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 51, 188
HaeIII GGCC 2 cut(s) 198, 259
HapII CCGG 1 cut(s) 136
Hin1II CATG 4 cut(s) 46, 102, 160, 244
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 2 cut(s) 259, 270
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 102, 121, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Hsp92II CATG 4 cut(s) 46, 102, 160, 244
KpnI GGTACC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 66, 245
LpnPI CCDG 6 cut(s) 39, 122, 149, 158, 174, 216
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 63
MnlI CCTC 4 cut(s) 126, 145, 209, 222
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 245
NcoI CCATGG 1 cut(s) 240
NlaIII CATG 4 cut(s) 46, 102, 160, 244
NlaIV GGNNCC 3 cut(s) 62, 134, 247
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 52, 189
PspN4I GGNNCC 3 cut(s) 62, 134, 247
RsaI GTAC 3 cut(s) 7, 134, 194
RsaNI GTAC 3 cut(s) 6, 133, 193
SatI GCNGC 2 cut(s) 51, 188
SduI GDGCHC 1 cut(s) 63
SetI ASST 1 cut(s) 134
SfaNI GCATC 1 cut(s) 102
SphI GCATGC 1 cut(s) 160
SsiI CCGC 2 cut(s) 48, 51
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 128, 240
TaaI ACNGT 1 cut(s) 19
TauI GCSGC 1 cut(s) 53
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 209
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.