FvH4_5g03960

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002180
Physical Location & Seq
Reverse (-)
2365038 .. 2365584
547 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03960.t1

Sequence Viewer

Length: 261 bp
ATGAAGATCATGAGTACTGCAAGCCATTTTTTCACTATGCCCCGGATGGGATCGAACAACCAGACGAGCAACAACAGCAAGATGTGTAGTTTCCAGATGCCGCTACACTACCCAAGGTACCAGAAGAGTGACTATGAGACCATGCCTGAGTGGAAGCTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.14

Weight (kDa)

9.23

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 5.4e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 58
AfaI GTAC 2 cut(s) 16, 119
AfiI CCNNNNNNNGG 3 cut(s) 47, 194, 240
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 58
AoxI GGCC 3 cut(s) 181, 231, 242
Asp718I GGTACC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 117
BccI CCATC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 119, 232
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 194, 240
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 41, 113
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 3 cut(s) 183, 233, 244
BshNI GGYRCC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 3 cut(s) 183, 233, 244
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 6, 50
BspACI CCGC 1 cut(s) 101
BspANI GGCC 3 cut(s) 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 119, 232
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 177, 252
Bst6I CTCTTC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 2 cut(s) 9, 53
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 2 cut(s) 75, 230
BstSCI CCNGG 1 cut(s) 41
BsuRI GGCC 3 cut(s) 183, 233, 244
BtsCI GGATG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 15, 118
CviAII CATG 2 cut(s) 10, 142
CviJI RGCY 5 cut(s) 24, 157, 183, 233, 244
CviKI_1 RGCY 5 cut(s) 24, 157, 183, 233, 244
CviQI GTAC 2 cut(s) 15, 118
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 13, 145
FaiI YATR 6 cut(s) 11, 38, 135, 143, 180, 255
FatI CATG 2 cut(s) 9, 141
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 3 cut(s) 183, 233, 244
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 13, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 2 cut(s) 177, 252
HpyCH4V TGCA 2 cut(s) 20, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 230
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 13, 145
KpnI GGTACC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 7 cut(s) 56, 74, 107, 134, 143, 159, 201
LweI GCATC 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 2 cut(s) 16, 136
MnlI CCTC 3 cut(s) 176, 194, 207
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 75, 230
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 2 cut(s) 13, 145
NlaIV GGNNCC 2 cut(s) 119, 232
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 119, 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 2 cut(s) 16, 119
RsaNI GTAC 2 cut(s) 15, 118
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 43
SetI ASST 2 cut(s) 119, 159
SfaNI GCATC 1 cut(s) 87
SsiI CCGC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 177, 252
TaqI TCGA 1 cut(s) 53
TatI WGTACW 1 cut(s) 14
TauI GCSGC 1 cut(s) 103
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.