Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

22555232 .. 22555812

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGTGGAGGAGGCATGGAATCCGTAGCCAGGCCGCGATCAAACGGCAGTGGTGCAGCCAATGGACAGCAGAAGAGAGAGCGCTGTGGCGACTTTCAGATGCCCCTGCACTATCCAAGGTACACTCAATCCGACTACGAGACCATGCCGGAGTGGAAGCTCGACTGTTTGCTTAAAGAGTATGGTCTACCGATTGCTGGGGACGTTGAACAGAAGAGGAAGTTTGCCATAGGAGCCTTCCTGTGGCCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

7.77

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	35
AfaI	GTAC	1 cut(s)	122
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	30, 197, 243
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	2 cut(s)	32, 245
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	2 cut(s)	35, 57
BlsI	GCNGC	2 cut(s)	36, 58
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 197, 243
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	3 cut(s)	30, 197, 243
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	197
BsgI	GTGCAG	2 cut(s)	75, 92
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	34, 247
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	30, 197, 243
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	34, 247
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	38
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	34, 247
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	68, 209
BstFNI	CGCG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	34, 247
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	16, 145
CviJI	RGCY	6 cut(s)	29, 34, 59, 160, 236, 247
CviKI_1	RGCY	6 cut(s)	29, 34, 59, 160, 236, 247
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	68, 209
EarI	CTCTTC	2 cut(s)	68, 209
Eco130I	CCWWGG	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	2 cut(s)	19, 148
FaiI	YATR	4 cut(s)	17, 146, 183, 230
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	15, 144
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	35, 57
Fsp4HI	GCNGC	2 cut(s)	35, 57
FspBI	CTAG	1 cut(s)	253
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	35, 57
GsaI	CCCAGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	34, 247
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	19, 148
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	123, 188
Hpy188I	TCNGA	2 cut(s)	99, 133
Hpy8I	GTNNAC	2 cut(s)	123, 188
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	56, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	19, 148
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	16, 43, 119, 162, 183
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	253
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	85, 226
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	2 cut(s)	5, 210
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	19, 148
NlaIV	GGNNCC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	36, 58
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	35, 57
Sau3AI	GATC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	3 cut(s)	122, 162, 207
SfaNI	GCATC	1 cut(s)	90
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	162
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.