Rroxscaffold_3G00260380

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002180
Physical Location & Seq
Reverse (-)
54814009 .. 54815392
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260380.1

Sequence Viewer

Length: 336 bp
ATGAAGATCATGAGTACTGCAAACCATGTTTTCGCTATGCCCCGGCTGGGATCAAACAACCAGACGAGCAACAACAGCAAGATATGTAGTTTCCAGATGCCGCTGCACTACCCGAGGTATCAGAAGAGTGACTATGAGGCCATGCCTGAGTGGAGACTGGACTGCCTCTTGAAACAGTATGGCCTCCCAGTCATTGGAGATGTCAACCAAAAGAGGAAGTTTGCAATGGGGGCCTTCCTTTGGCCTTCACAGGCATACACAGCTCTGACAGAAGACAATGGGGAATTGAATTCCTTTATTGAGGCAGTACTATTAATCTTCCTGCAATGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.74

Weight (kDa)

6.71

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 37 - 82 2.8e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 194
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 16, 309
AfiI CCNNNNNNNGG 3 cut(s) 47, 194, 240
AgsI TTSAA 2 cut(s) 172, 289
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 4 cut(s) 138, 181, 231, 242
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 289
AseI ATTAAT 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 334
BisI GCNGC 2 cut(s) 101, 104
BlsI GCNGC 2 cut(s) 102, 105
BmcAI AGTACT 2 cut(s) 16, 309
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 41, 113
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 194, 240
Bse1I ACTGG 2 cut(s) 162, 188
Bse3DI GCAATG 2 cut(s) 231, 332
BseDI CCNNGG 2 cut(s) 41, 113
BseLI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BseMI GCAATG 2 cut(s) 231, 332
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 162, 188
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 4 cut(s) 140, 183, 233, 244
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 47, 194, 240
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 4 cut(s) 140, 183, 233, 244
BsoBI CYCGRG 1 cut(s) 112
Bsp143I GATC 2 cut(s) 6, 50
BspACI CCGC 1 cut(s) 101
BspANI GGCC 4 cut(s) 140, 183, 233, 244
BspCNI CTCAG 1 cut(s) 139
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 2 cut(s) 231, 332
BsrI ACTGG 2 cut(s) 162, 188
BssECI CCNNGG 2 cut(s) 41, 113
BssMI GATC 2 cut(s) 6, 50
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 2 cut(s) 9, 53
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 6, 50
BstMWI GCNNNNNNNGC 3 cut(s) 75, 230, 260
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 279
BsuRI GGCC 4 cut(s) 140, 183, 233, 244
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 15, 308
CviAII CATG 3 cut(s) 10, 26, 142
CviJI RGCY 6 cut(s) 46, 140, 183, 233, 244, 263
CviKI_1 RGCY 6 cut(s) 46, 140, 183, 233, 244, 263
CviQI GTAC 2 cut(s) 15, 308
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 8, 52
DpnII GATC 2 cut(s) 6, 50
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 289
FaeI CATG 3 cut(s) 13, 29, 145
FaiI YATR 8 cut(s) 11, 27, 38, 85, 135, 143, 180, 256
FatI CATG 3 cut(s) 9, 25, 141
Fnu4HI GCNGC 2 cut(s) 101, 104
Fsp4HI GCNGC 2 cut(s) 101, 104
FspBI CTAG 1 cut(s) 334
GluI GCNGC 2 cut(s) 101, 104
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 4 cut(s) 140, 183, 233, 244
HapII CCGG 1 cut(s) 43
Hin1II CATG 3 cut(s) 13, 29, 145
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 123, 267
Hpy188III TCNNGA 3 cut(s) 10, 94, 169
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 244, 255
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 20, 106, 224, 325
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 230, 260
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 3 cut(s) 13, 29, 145
Kzo9I GATC 2 cut(s) 6, 50
LpnPI CCDG 8 cut(s) 32, 56, 74, 107, 143, 159, 201, 236
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 128, 329
MalI GATC 2 cut(s) 8, 52
MboI GATC 2 cut(s) 6, 50
MboII GAAGA 4 cut(s) 16, 136, 284, 310
MluCI AATT 2 cut(s) 284, 289
MnlI CCTC 6 cut(s) 108, 130, 176, 194, 207, 295
MseI TTAA 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 75, 230, 260
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 6, 50
NlaIII CATG 3 cut(s) 13, 29, 145
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 128, 329
PagI TCATGA 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 2 cut(s) 102, 105
PshBI ATTAAT 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 231
RsaI GTAC 2 cut(s) 16, 309
RsaNI GTAC 2 cut(s) 15, 308
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 2 cut(s) 6, 50
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 2 cut(s) 16, 309
ScrFI CCNGG 1 cut(s) 43
SetI ASST 2 cut(s) 119, 265
SfaNI GCATC 1 cut(s) 87
Sse9I AATT 2 cut(s) 284, 289
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 177
TasI AATT 2 cut(s) 284, 289
TatI WGTACW 2 cut(s) 14, 307
TauI GCSGC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 2 cut(s) 128, 329
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 2 cut(s) 128, 329
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 194
VspI ATTAAT 1 cut(s) 314
XapI RAATTY 1 cut(s) 289
XspI CTAG 1 cut(s) 334
ZrmI AGTACT 2 cut(s) 16, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.