Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

18213612 .. 18213866

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1076200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGTGGAGGAGGCCTGGAATCGGTGGCTAGGGCGCGATCAACCACGGGTGGTGCAGCCAACGGACAACACAAGGGAGAGCGCTGCGGATACTTTCAGATGCCTCTGCACTATCCGCGGTACACTAAGTCCGACTATGAGACCATGCCGGAGTGGAAGCTTGACTGCTTGCTTCGAGAGTATGGTCTGCCGATCACTGGGGATGTTCAACACAAGAGGCAGTTTTCCATAGGAGCGTTCCTGTGGCCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

8.66

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	38 - 83	6.1e-29	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	37, 118
AciI	CCGC	3 cut(s)	87, 116, 118
AfaI	GTAC	1 cut(s)	122
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	22, 197
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	134
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	2 cut(s)	13, 245
ApeKI	GCWGC	2 cut(s)	56, 84
AspLEI	GCGC	2 cut(s)	37, 84
BbvI	GCAGC	2 cut(s)	68, 71
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	30, 253
BfoI	RGCGCY	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	57, 85
BlsI	GCNGC	2 cut(s)	58, 86
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	45, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 197
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	45, 116
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	22, 197
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	68, 71
BsgI	GTGCAG	2 cut(s)	75, 92
Bsh1236I	CGCG	2 cut(s)	37, 118
BshFI	GGCC	2 cut(s)	15, 247
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	22, 197
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	15, 247
Bso31I	GGTCTC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	38, 192
BspACI	CCGC	3 cut(s)	87, 116, 118
BspANI	GGCC	2 cut(s)	15, 247
BspFNI	CGCG	2 cut(s)	37, 118
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	45, 116
BssMI	GATC	2 cut(s)	38, 192
Bst2UI	CCWGG	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	2 cut(s)	45, 116
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	37, 118
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	37, 84
BstKTI	GATC	2 cut(s)	41, 195
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	38, 192
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	2 cut(s)	37, 118
BstV1I	GCAGC	2 cut(s)	68, 71
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	15, 247
BtgI	CCRYGG	2 cut(s)	45, 116
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	2 cut(s)	37, 84
Cfr42I	CCGCGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	15, 29, 59, 160, 247
CviKI_1	RGCY	5 cut(s)	15, 29, 59, 160, 247
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	40, 194
DpnII	GATC	2 cut(s)	38, 192
Eco147I	AGGCCT	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	148
FaiI	YATR	4 cut(s)	138, 146, 183, 230
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	57, 85
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	57, 85
FspBI	CTAG	2 cut(s)	30, 253
GlaI	GCGC	2 cut(s)	36, 83
GluI	GCNGC	2 cut(s)	57, 85
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	15, 247
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	2 cut(s)	37, 84
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	35, 82
HinP1I	GCGC	2 cut(s)	35, 82
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	99, 133
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	56, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	35, 82
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	38, 192
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	2, 29, 162, 183
Lsp1109I	GCAGC	2 cut(s)	68, 71
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	30, 253
MalI	GATC	2 cut(s)	40, 194
MboI	GATC	2 cut(s)	38, 192
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	5, 114, 210
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MvnI	CGCG	2 cut(s)	37, 118
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	2 cut(s)	38, 192
NlaIII	CATG	1 cut(s)	148
PceI	AGGCCT	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	58, 86
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacII	CCGCGG	1 cut(s)	119
SatI	GCNGC	2 cut(s)	57, 85
Sau3AI	GATC	2 cut(s)	38, 192
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	3 cut(s)	87, 116, 118
SspMI	CTAG	2 cut(s)	30, 253
StuI	AGGCCT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	56, 84
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	202
XspI	CTAG	2 cut(s)	30, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.