Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002180

Physical Location & Seq

Genomic Coordinates Reverse (-)

50821518 .. 50821745

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGAGCGATGTCGTCTTGGTCACAAGAACCAAATGGACAGCACAAGAGAGAGCGATGCGAGTATTTTCAGATGCCCCTGCACTATCCAAGGTACAAGAAATCCGACTATGAGACCATGCCGGAGTGGAAGCTTGACTGTTTGCTTAGATCTTATGGGCTACCGATTACTGGAGATGTTGAAGAGAGGAGGAAGTCAGCCATGGGAAACTTTCTGTGGTATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

9.07

Weight (kDa)

7.78

Isoelectric Point (pI)

69.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7722	PF24847	29 - 73	8e-27	Domain of unknown function (DUF7722)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41761
fragaria_vesca	FvH4_5g03960 FvH4_5g12300 FvH4_7g15930 FvH4_7g15940 FvH4_7g15950
malus_domestica	MD01G1076200.v1.1 MD06G1100900.v1.1 MD06G1101000.v1.1 MD14G1120700.v1.1
prunus_persica	Prupe.2G183600_v2.0.a1 Prupe.5G114500_v2.0.a1
pyrus_communis	pycom01g10510 pycom06g09610
rosa_chinensis	RchiOBHm_Chr1g0358821 RchiOBHm_Chr1g0358841 RchiOBHm_Chr1g0359501 RchiOBHm_Chr7g0195541
rosa_laevigata	RLG00000004111
rosa_multiflora	Rmu_sc0002556.1_g000009 Rmu_sc0007783.1_g000003 Rmu_sc0007783.1_g000005 Rmu_sc0008757.1_g000018 Rmu_ssc0000078.1_g000004
rosa_roxburghii	Rroxscaffold_3G00260380 Rroxscaffold_4G00296950 Rroxscaffold_4G00297590
rosa_rugosa	Rorug01G0265500 Rorug01G0265700 Rorug01G0271800 Rorug07G0024100
rosa_samantha	Rh1AG285200 Rh1BG246200 Rh1BG251300 Rh1CG263600 Rh1CG269100 Rh1DG274600 Rh1DG280400 Rh7AG151700 Rh7BG153400 Rh7CG156900 Rh7DG152700
rosa_wichuraiana	Rw7G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	149
BmsI	GCATC	2 cut(s)	47, 63
BpmI	CTGGAG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	89, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	89, 201
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	89, 201
BssMI	GATC	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	89, 201
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	2 cut(s)	23, 70
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	118, 202
CviJI	RGCY	3 cut(s)	133, 160, 200
CviKI_1	RGCY	3 cut(s)	133, 160, 200
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	89, 201
Eco31I	GGTCTC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	89, 201
ErhI	CCWWGG	2 cut(s)	89, 201
FaeI	CATG	2 cut(s)	121, 205
FaiI	YATR	5 cut(s)	111, 119, 156, 203, 222
FatI	CATG	2 cut(s)	117, 201
FspBI	CTAG	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	192
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	121, 205
HindIII	AAGCTT	1 cut(s)	131
HpaII	CCGG	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	72, 106
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	121, 205
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	92, 135, 156
LweI	GCATC	2 cut(s)	47, 63
MaeI	CTAG	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	180, 183
MspI	CCGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	121, 205
NmuCI	GTSAC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	149
SetI	ASST	2 cut(s)	95, 135
SfaNI	GCATC	2 cut(s)	47, 63
SspMI	CTAG	1 cut(s)	226
StyI	CCWWGG	2 cut(s)	89, 201
TaaI	ACNGT	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.