Rroxscaffold_4G00297590

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002180
Physical Location & Seq
Forward (+)
17484650 .. 17484877
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297590.1

Sequence Viewer

Length: 228 bp
ATGGAATCGGTGTCGACGTCTAGGCATCAACAGAATGGTCATCACAGCAGCAAGCGATGTGGGTATTTTCAGATGCCTCTGCACTATCCAAGGTACACCAAATCGGACTACGAGACCATGCCGGAGTGGAGGCTCGACTGTTTGCTTAAAGAGTATGGGCTGCCGATCTCCGGAGACGTTGAGCAGAAGAGGAAGTTTGCCATGGGAGCCTTCTTGTGGTCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.94

Weight (kDa)

8.62

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 29 - 74 2.2e-30 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 95, 224
AfiI CCNNNNNNNGG 2 cut(s) 170, 216
Alw26I GTCTC 2 cut(s) 107, 168
Aor13HI TCCGGA 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 48, 160
BbvI GCAGC 2 cut(s) 60, 147
BcoDI GTCTC 2 cut(s) 107, 168
BfaI CTAG 2 cut(s) 21, 226
BisI GCNGC 2 cut(s) 49, 161
BlsI GCNGC 2 cut(s) 50, 162
BmiI GGNNCC 1 cut(s) 208
BmsI GCATC 2 cut(s) 34, 63
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 89, 201
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 216
BseAI TCCGGA 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 89, 201
BseLI CCNNNNNNNGG 2 cut(s) 170, 216
BseXI GCAGC 2 cut(s) 60, 147
BsgI GTGCAG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 122, 171
BslI CCNNNNNNNGG 2 cut(s) 170, 216
BsmAI GTCTC 2 cut(s) 107, 168
BsmBI CGTCTC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 89, 201
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 89, 201
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 201
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 107, 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 60, 147
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 94, 223
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 2 cut(s) 118, 202
CviJI RGCY 3 cut(s) 133, 160, 209
CviKI_1 RGCY 3 cut(s) 133, 160, 209
CviQI GTAC 2 cut(s) 94, 223
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 89, 201
Eco31I GGTCTC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 89, 201
ErhI CCWWGG 2 cut(s) 89, 201
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 2 cut(s) 121, 205
FaiI YATR 3 cut(s) 119, 156, 203
FatI CATG 2 cut(s) 117, 201
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 2 cut(s) 49, 161
Fsp4HI GCNGC 2 cut(s) 49, 161
FspBI CTAG 2 cut(s) 21, 226
GluI GCNGC 2 cut(s) 49, 161
HapII CCGG 2 cut(s) 122, 171
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 2 cut(s) 121, 205
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 5
HpaII CCGG 2 cut(s) 122, 171
Hpy166II GTNNAC 2 cut(s) 15, 96
Hpy188I TCNGA 2 cut(s) 72, 106
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 2 cut(s) 15, 96
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 17, 177
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 2 cut(s) 17, 177
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 2 cut(s) 121, 205
Kpn2I TCCGGA 1 cut(s) 170
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 2 cut(s) 135, 184
Lsp1109I GCAGC 2 cut(s) 60, 147
LweI GCATC 2 cut(s) 34, 63
MaeI CTAG 2 cut(s) 21, 226
MaeII ACGT 2 cut(s) 17, 177
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 199
MnlI CCTC 3 cut(s) 87, 123, 183
MroI TCCGGA 1 cut(s) 170
MseI TTAA 1 cut(s) 147
MspI CCGG 2 cut(s) 122, 171
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 121, 205
NlaIV GGNNCC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 50, 162
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 2 cut(s) 95, 224
RsaNI GTAC 2 cut(s) 94, 223
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 49, 161
Sau3AI GATC 1 cut(s) 165
SetI ASST 3 cut(s) 20, 95, 180
SfaNI GCATC 2 cut(s) 34, 63
SgeI CNNG 9 cut(s) 33, 64, 102, 124, 130, 134, 146, 183, 214
SspMI CTAG 2 cut(s) 21, 226
StyI CCWWGG 2 cut(s) 89, 201
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 20, 180
TaqI TCGA 2 cut(s) 14, 135
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 2 cut(s) 48, 160
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 2 cut(s) 21, 226
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.