pycom06g09610

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0002180
Physical Location & Seq
Reverse (-)
14922558 .. 14922827
270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09610.1

Sequence Viewer

Length: 270 bp
ATGAATACCACTGAAACTGGCTTTAGCAACCACGCTTTCACCATGCTCGGTGGCCTCCAAGGAAATGAGCAAACTAGTTGGAACAACACCCCCTGCAACTTCCAGATGCCTCTGCACTACCCAAGGTACCAGAAGAGTGACTATGAGAGCATGCCTGAGTGGAAACTGGACTGCCTTCTGAAGAAGAATGGCCTCCCAGTCATCGGAGATGTCAACCAAAAGAGGAAGTTTGCCATGGGGGCCTTCCTTTGGCCTTCCCAGTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.31

Weight (kDa)

6.71

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 40 - 85 4.5e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 203, 249
AhlI ACTAGT 1 cut(s) 74
AoxI GGCC 4 cut(s) 52, 190, 240, 251
Asp718I GGTACC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 31
BanI GGYRCC 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 128, 241
BmrI ACTGGG 2 cut(s) 191, 253
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 2 cut(s) 191, 253
BsaJI CCNNGG 3 cut(s) 58, 122, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 249
Bse1I ACTGG 4 cut(s) 22, 171, 197, 259
BseDI CCNNGG 3 cut(s) 58, 122, 234
BseLI CCNNNNNNNGG 2 cut(s) 203, 249
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 4 cut(s) 22, 171, 197, 259
BsgI GTGCAG 1 cut(s) 98
BshFI GGCC 4 cut(s) 54, 192, 242, 253
BshNI GGYRCC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 203, 249
BsnI GGCC 4 cut(s) 54, 192, 242, 253
Bsp19I CCATGG 1 cut(s) 234
BspANI GGCC 4 cut(s) 54, 192, 242, 253
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 128, 241
BspT107I GGYRCC 1 cut(s) 126
BsrI ACTGG 4 cut(s) 22, 171, 197, 259
BssECI CCNNGG 3 cut(s) 58, 122, 234
BssT1I CCWWGG 3 cut(s) 58, 122, 234
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 154
BsuRI GGCC 4 cut(s) 54, 192, 242, 253
BtgI CCRYGG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 43, 151, 235
CviJI RGCY 5 cut(s) 21, 54, 192, 242, 253
CviKI_1 RGCY 5 cut(s) 21, 54, 192, 242, 253
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 3 cut(s) 58, 122, 234
Eco57I CTGAAG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 240
EcoT14I CCWWGG 3 cut(s) 58, 122, 234
ErhI CCWWGG 3 cut(s) 58, 122, 234
FaeI CATG 3 cut(s) 46, 154, 238
FaiI YATR 5 cut(s) 44, 144, 152, 236, 264
FatI CATG 3 cut(s) 42, 150, 234
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 4 cut(s) 54, 192, 242, 253
Hin1II CATG 3 cut(s) 46, 154, 238
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 180, 206
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 185, 253, 264
HpyCH4V TGCA 2 cut(s) 96, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 3 cut(s) 46, 154, 238
KpnI GGTACC 1 cut(s) 130
LpnPI CCDG 7 cut(s) 3, 106, 116, 143, 152, 168, 210
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 3 cut(s) 145, 193, 196
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 65, 120, 203, 216
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 234
NlaIII CATG 3 cut(s) 46, 154, 238
NlaIV GGNNCC 2 cut(s) 128, 241
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 128, 241
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 240
SetI ASST 1 cut(s) 128
SfaNI GCATC 1 cut(s) 96
SpeI ACTAGT 1 cut(s) 74
SphI GCATGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 75
StyI CCWWGG 3 cut(s) 58, 122, 234
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 16
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.