pycom01g10510

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002180
Physical Location & Seq
Reverse (-)
11268766 .. 11269020
255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10510.1

Sequence Viewer

Length: 255 bp
ATGAGTGGAGGAGGCCTGGAATCGGTGGCTAGGGCGCGATCAACGACGGGTTGTGCAGCCAACGGACAACACAAGGGAGAGCACTGCGGATACTTTCAGATGCCTCTGCACTATCCGCGGTACACTAAGTCCGACTATGAGACCATGCCGGAGTGGAAGCTTGACTGCTTGCTTCGAGAGTATGGTCTGCCGATCACTGGGGATGTTCAACACAAGAGGCAGTTTTCCATAGGAGCGTTCCTGTGGCCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.49

Weight (kDa)

7.76

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 38 - 83 6.1e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 37, 118
AciI CCGC 3 cut(s) 87, 116, 118
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 22, 197
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 2 cut(s) 13, 245
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 17
BciVI GTATCC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 30, 253
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 197
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 22, 197
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 75, 92
Bsh1236I CGCG 2 cut(s) 37, 118
BshFI GGCC 2 cut(s) 15, 247
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 22, 197
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 15, 247
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 38, 192
BspACI CCGC 3 cut(s) 87, 116, 118
BspANI GGCC 2 cut(s) 15, 247
BspFNI CGCG 2 cut(s) 37, 118
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 38, 192
Bst2UI CCWGG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 2 cut(s) 37, 118
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 41, 195
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 38, 192
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 2 cut(s) 37, 118
BstV1I GCAGC 1 cut(s) 68
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 15, 247
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 82, 195
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 37
Cfr42I CCGCGG 1 cut(s) 119
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 145
CviJI RGCY 5 cut(s) 15, 29, 59, 160, 247
CviKI_1 RGCY 5 cut(s) 15, 29, 59, 160, 247
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 40, 194
DpnII GATC 2 cut(s) 38, 192
Eco147I AGGCCT 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 148
FaiI YATR 4 cut(s) 138, 146, 183, 230
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 30, 253
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 15, 247
HapII CCGG 1 cut(s) 149
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 99, 133
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 56, 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 1 cut(s) 35
KspI CCGCGG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 38, 192
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 2, 29, 162, 183
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 90
MaeI CTAG 2 cut(s) 30, 253
MalI GATC 2 cut(s) 40, 194
MboI GATC 2 cut(s) 38, 192
MhlI GDGCHC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 5, 114, 210
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 2 cut(s) 37, 118
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 2 cut(s) 38, 192
NlaIII CATG 1 cut(s) 148
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacII CCGCGG 1 cut(s) 119
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 38, 192
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 84
SetI ASST 1 cut(s) 162
SfaNI GCATC 1 cut(s) 90
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 3 cut(s) 87, 116, 118
SspMI CTAG 2 cut(s) 30, 253
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 175
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 2 cut(s) 89, 202
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 2 cut(s) 89, 202
XspI CTAG 2 cut(s) 30, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.