Rorug01G0271800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002180
Physical Location & Seq
Forward (+)
38417181 .. 38419951
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271800.1

Sequence Viewer

Length: 2130 bp
ATGGATTTCAGGATTTTAGAGGCAATCGAGAGAAAGGACATAGTCACATTTGCTAGCTTAGTCCGAGAAAATGAAGGAATTCTCGAGCAAAGAGAAGCTGATACTCTGAACACGCCATTACACCTTGTGTCAAAGTTTGGATGCCTTGAAATGGCATCTGAAATTGTTTCTTTGTGCCCGGACATGGTTGCTGCTGAGAATAAGAACCAGGAGACTCCAGTCCATGAAGCTTGTCGAACAGGGAATCCCCAGATTTTAAACATACTACTGGAAGCTAATCCTGAAGTAGTTAGTAAGCTTAACAGTAGAGAGAAAATCAGTGCACTTTCTCTGGCATGTAGCTATGGTCATCTTGATGTGGTGAGGCTCTTACTGAAAGAGCCTGGGAAGCTGGGTTTAGGGAAAGAAGGATTTGATCAAGCATGTATACACTTGGCTGTGACTGGTGGACACAAGGATGTTGTTAAAGAGTTGCTAAGAGTGTGTCCTGACCTTGCTTATATGGTTGATGAGAAAGGAAACTATCCATTGCACTATGCAACTAGCAAAGAAAACAGGGAGATAACCTGGACACTCCTCAAGCTTGATCCAAAGCTTGCTCAAAAGCACAATCTCAGTGGTCAAACACCCTTGCACTTGGCAGCAATAAACTACAAAATCTCAGTCCTTCTGGTTTTTGTCTCAGTGGCTAAACCATCTTTTCAGATCGTTACAAAAGCCGGAGAGACAGTGTTCCACTTGGCTGTGAAATATGGGCGCTATGATGCTATAGTATACTTGACCTGTGTCTGTGATGATGTGGATTTCTTTGACTGTCGAGACCGTTATAGTAATACCATCCTACATCTTGCAGTTTCTGAAGCACAACATAAGATTGCAGAGTACCTAATCAGCAAAAAAAAAGTGGAGCTCAATTCTAGAAACAATGAAGGACTGACAGCCCTTGACCTCCTCAAACAGAGCAAGAAAAGTGAAGACAATCAGCGTCTTGAAGCCATGCTAATGAAAGCAGGAGGTAAAACAAGGATTGAACTGTTATCAACTTCACCAAAAGCAGATAAAGCCACTACTCAGCCAGTGACACTTCCTGAAAACATTCCAAAACGAGCACAATTTTTTAAAGAGCATGAACTGCAGTTGTCCATAGCTTGGTCTGCTGCATCCAAGTCCCCATCAAGATCATCAGCACCTATGTCCCAGATGTCAACACCTTTTCCATCACCCCAATCCAGCAAATCTTCACCTAAGCTGCCATCACCGCAATCTAGCAAGTCATCGCCTAAGCTGCCATCCCCACCATCTAGCAAGTCATCGCCTAAGCTGCCATCCCCACCATCTAGCAAGTCATCGCCTCAGCTTCAGGTTGGGGAAGGCTCATCACGTCAGCAGCAAGTTGGATCAGCATTTGAAGTTAAAGAGGGACTGGAATATGAAAGACAGAAGAAGCATGAGTTTCTTTTGCAAACCTTTGCAAGACAACACTATCCAAGCAAATGGAACCAAACAGAAATGAGTACCGAGATTTTCTACAGCCGGCGAAGGAAACATGAAAAAGTATATACAGAGGCACTACAGAATGCAAGGAACACTATAACACTAGTTGCCATTTTGATCGCAACGGTTACTTTTGCTGCTGGCATTAGTCCCCCGGGTGGTGTTTATCAGGATACACATATGAAAGGGAAGTCAATAGCAGGCACAACAACTGCTTTCAAGGTGTTTGAAATAAGCAATTATGTCGCGCTATTCACATCACTCTCGATAGTTGTTGTTCTTATGAGTATCATTCCATATCGGAGAAAGCCATTGATAAGGTTGTTGAGGGTTGCTCATAAGGTAATGTGGGTAGCTGTGGCATTCATGGCAACAGGGTTTGTTGCAGCCACATGGGTTATCATGCCACATAATCCGAAAAATGAATTGTTGTTTGTAGCCTTTTTGACTATAAGCATTGGAATTCTGGGAACAGTTTTTATTTGGCTAGGTGTTATGCTAGTTGTTCATTGCCTACGAAAGTCGAAGTGGAAGAAGAGAAGGAGAGAAATTGGGGAGGCTGATGAGGACCCTGAAATGGGAAGCCAAAACTCAGATGTTCATAGCACCTATGATCAAGGATATCATTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

709

Amino Acids

79.05

Weight (kDa)

9.18

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 32 - 96 7.3e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 40 - 126 1.8e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 103 - 159 1.9e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 109 - 196 2.1e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 235 - 307 1.4e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 245 - 316 1.5e-06 Ankyrin repeats (3 copies)
PGG PF13962 522 - 631 9.9e-31 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1149
AccI GTMKAC 2 cut(s) 427, 774
AccII CGCG 1 cut(s) 1742
AciI CCGC 1 cut(s) 1259
AclWI GGATC 2 cut(s) 581, 1405
AcsI RAATTY 2 cut(s) 78, 1956
AcuI CTGAAG 3 cut(s) 303, 879, 1343
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 2 cut(s) 884, 1516
AfiI CCNNNNNNNGG 6 cut(s) 151, 184, 1149, 1652, 2071, 2072
AgsI TTSAA 6 cut(s) 149, 992, 1031, 1409, 1714, 1724
AhlI ACTAGT 1 cut(s) 1597
AjiI CACGTC 1 cut(s) 1382
AjnI CCWGG 3 cut(s) 207, 382, 566
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
Alw21I GWGCWC 3 cut(s) 325, 912, 1111
Alw26I GTCTC 4 cut(s) 206, 685, 719, 813
Alw44I GTGCAC 1 cut(s) 321
AlwI GGATC 2 cut(s) 581, 1405
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 2 cut(s) 83, 1648
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 9 cut(s) 191, 641, 1157, 1249, 1285, 1321, 1387, 1631, 1880
ApoI RAATTY 2 cut(s) 78, 1956
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
Asp700I GAANNNNTTC 2 cut(s) 78, 1095
AspLEI GCGC 2 cut(s) 759, 1744
AspS9I GGNCC 1 cut(s) 2062
AsuC2I CCSGG 3 cut(s) 179, 1649, 1650
AsuHPI GGTGA 5 cut(s) 373, 1038, 1212, 1233, 1248
AsuNHI GCTAGC 1 cut(s) 53
AvaI CYCGRG 2 cut(s) 83, 1648
AvaII GGWCC 1 cut(s) 2062
BaeGI GKGCMC 2 cut(s) 179, 325
BanII GRGCYC 1 cut(s) 912
BbsI GAAGAC 1 cut(s) 981
Bbv12I GWGCWC 3 cut(s) 325, 912, 1111
BbvCI CCTCAGC 1 cut(s) 1353
BbvI GCAGC 9 cut(s) 178, 653, 1144, 1236, 1272, 1308, 1399, 1618, 1892
BccI CCATC 9 cut(s) 703, 845, 1180, 1225, 1261, 1297, 1306, 1333, 1342
BcgI CGANNNNNNTGC 2 cut(s) 1720, 1754
BciT130I CCWGG 3 cut(s) 209, 384, 568
BciVI GTATCC 1 cut(s) 1660
BclI TGATCA 2 cut(s) 415, 2107
BcnI CCSGG 3 cut(s) 179, 1649, 1650
BcoDI GTCTC 4 cut(s) 206, 685, 719, 813
BcuI ACTAGT 1 cut(s) 1597
BfaI CTAG 9 cut(s) 54, 543, 918, 1266, 1302, 1338, 1598, 1982, 1994
BfmI CTRYAG 4 cut(s) 768, 1133, 1528, 1571
BfoI RGCGCY 1 cut(s) 760
BfuI GTATCC 1 cut(s) 1660
BisI GCNGC 9 cut(s) 192, 642, 1158, 1250, 1286, 1322, 1388, 1632, 1881
BlsI GCNGC 9 cut(s) 193, 643, 1159, 1251, 1287, 1323, 1389, 1633, 1882
Bme1390I CCNGG 6 cut(s) 179, 209, 384, 568, 1649, 1650
Bme18I GGWCC 1 cut(s) 2062
BmeT110I CYCGRG 2 cut(s) 83, 1648
BmgBI CACGTC 1 cut(s) 1382
BmgT120I GGNCC 1 cut(s) 2062
BmiI GGNNCC 2 cut(s) 1499, 2064
BmrFI CCNGG 6 cut(s) 179, 209, 384, 568, 1649, 1650
BmsI GCATC 4 cut(s) 131, 164, 754, 1169
BmtI GCTAGC 1 cut(s) 57
BoxI GACNNNNGTC 2 cut(s) 218, 785
BpiI GAAGAC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 1813, 1845
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 4 cut(s) 1245, 1281, 1317, 1353
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 3 cut(s) 179, 1649, 1650
BsaI GGTCTC 1 cut(s) 813
BsaJI CCNNGG 3 cut(s) 383, 1647, 1648
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 184, 1149, 1652, 2071, 2072
Bse118I RCCGGY 1 cut(s) 1533
Bse1I ACTGG 5 cut(s) 218, 273, 448, 1076, 1428
Bse3DI GCAATG 2 cut(s) 527, 2002
BseBI CCWGG 3 cut(s) 209, 384, 568
BseDI CCNNGG 3 cut(s) 383, 1647, 1648
BseGI GGATG 6 cut(s) 146, 463, 837, 1160, 1289, 1325
BseLI CCNNNNNNNGG 6 cut(s) 151, 184, 1149, 1652, 2071, 2072
BseMI GCAATG 2 cut(s) 527, 2002
BseMII CTCAG 7 cut(s) 186, 628, 675, 696, 1085, 1367, 2100
BseNI ACTGG 5 cut(s) 218, 273, 448, 1076, 1428
BseRI GAGGAG 2 cut(s) 566, 941
BseSI GKGCMC 2 cut(s) 179, 325
BseXI GCAGC 9 cut(s) 178, 653, 1144, 1236, 1272, 1308, 1399, 1618, 1892
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 1742
BsiHKAI GWGCWC 3 cut(s) 325, 912, 1111
BsiHKCI CYCGRG 2 cut(s) 83, 1648
BsiSI CCGG 4 cut(s) 179, 720, 1534, 1649
BslFI GGGAC 4 cut(s) 1153, 1180, 1434, 1629
BslI CCNNNNNNNGG 6 cut(s) 151, 184, 1149, 1652, 2071, 2072
BsmAI GTCTC 4 cut(s) 206, 685, 719, 813
BsmFI GGGAC 4 cut(s) 1153, 1180, 1434, 1629
BsmI GAATGC 2 cut(s) 1582, 1856
Bso31I GGTCTC 1 cut(s) 813
BsoBI CYCGRG 2 cut(s) 83, 1648
Bsp1286I GDGCHC 4 cut(s) 179, 325, 912, 1111
Bsp143I GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
BspACI CCGC 1 cut(s) 1259
BspCNI CTCAG 7 cut(s) 187, 627, 674, 695, 1084, 1366, 2099
BspFNI CGCG 1 cut(s) 1742
BspLI GGNNCC 2 cut(s) 1499, 2064
BspMAI CTGCAG 1 cut(s) 1137
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 581, 1405
BspTNI GGTCTC 1 cut(s) 813
BsrDI GCAATG 2 cut(s) 527, 2002
BsrFI RCCGGY 1 cut(s) 1533
BsrI ACTGG 5 cut(s) 218, 273, 448, 1076, 1428
BssAI RCCGGY 1 cut(s) 1533
BssECI CCNNGG 3 cut(s) 383, 1647, 1648
BssMI GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
BssNAI GTATAC 2 cut(s) 428, 775
Bst1107I GTATAC 2 cut(s) 428, 775
Bst2UI CCWGG 3 cut(s) 209, 384, 568
Bst4CI ACNGT 7 cut(s) 305, 730, 815, 824, 1035, 1621, 1969
Bst6I CTCTTC 1 cut(s) 2024
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstC8I GCNNGC 5 cut(s) 55, 597, 1535, 1636, 1696
BstF5I GGATG 6 cut(s) 146, 463, 837, 1160, 1289, 1325
BstFNI CGCG 1 cut(s) 1742
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 2 cut(s) 759, 1744
BstKTI GATC 7 cut(s) 418, 589, 708, 1181, 1400, 1614, 2110
BstMAI GTCTC 4 cut(s) 206, 685, 719, 813
BstMBI GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
BstMWI GCNNNNNNNGC 8 cut(s) 388, 1061, 1132, 1154, 1258, 1285, 1321, 1862
BstNI CCWGG 3 cut(s) 209, 384, 568
BstNSI RCATGY 2 cut(s) 339, 426
BstPAI GACNNNNGTC 2 cut(s) 218, 785
BstSCI CCNGG 6 cut(s) 177, 207, 382, 566, 1647, 1648
BstSFI CTRYAG 4 cut(s) 768, 1133, 1528, 1571
BstSLI GKGCMC 2 cut(s) 179, 325
BstUI CGCG 1 cut(s) 1742
BstV1I GCAGC 9 cut(s) 178, 653, 1144, 1236, 1272, 1308, 1399, 1618, 1892
BstV2I GAAGAC 1 cut(s) 981
BstXI CCANNNNNNTGG 1 cut(s) 1494
BstZ17I GTATAC 2 cut(s) 428, 775
BsuI GTATCC 1 cut(s) 1660
BtgZI GCGATG 3 cut(s) 1260, 1296, 1332
BtrI CACGTC 1 cut(s) 1382
BtsCI GGATG 6 cut(s) 146, 463, 837, 1160, 1289, 1325
BtsIMutI CAGTG 5 cut(s) 325, 622, 690, 735, 1083
Cac8I GCNNGC 5 cut(s) 55, 597, 1535, 1636, 1696
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 759, 1744
Cfr10I RCCGGY 1 cut(s) 1533
Cfr13I GGNCC 1 cut(s) 2062
Cfr9I CCCGGG 1 cut(s) 1648
CseI GACGC 1 cut(s) 974
Csp6I GTAC 2 cut(s) 883, 1515
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviQI GTAC 2 cut(s) 883, 1515
DpnI GATC 7 cut(s) 417, 588, 707, 1180, 1399, 1613, 2109
DpnII GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
DraI TTTAAA 2 cut(s) 258, 1120
DraIII CACNNNGTG 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 2024
EarI CTCTTC 1 cut(s) 2024
Ecl136II GAGCTC 1 cut(s) 910
Eco24I GRGCYC 1 cut(s) 912
Eco31I GGTCTC 1 cut(s) 813
Eco32I GATATC 1 cut(s) 2117
Eco47I GGWCC 1 cut(s) 2062
Eco53kI GAGCTC 1 cut(s) 910
Eco57I CTGAAG 3 cut(s) 303, 879, 1343
Eco88I CYCGRG 2 cut(s) 83, 1648
EcoICRI GAGCTC 1 cut(s) 910
EcoO109I RGGNCCY 1 cut(s) 2062
EcoRI GAATTC 2 cut(s) 78, 1956
EcoRII CCWGG 3 cut(s) 207, 382, 566
EcoRV GATATC 1 cut(s) 2117
EcoT38I GRGCYC 1 cut(s) 912
FaqI GGGAC 4 cut(s) 1153, 1180, 1434, 1629
FauNDI CATATG 1 cut(s) 1674
FbaI TGATCA 2 cut(s) 415, 2107
FblI GTMKAC 2 cut(s) 427, 774
Fnu4HI GCNGC 9 cut(s) 192, 642, 1158, 1250, 1286, 1322, 1388, 1632, 1881
FokI GGATG 6 cut(s) 153, 470, 824, 1147, 1276, 1312
FriOI GRGCYC 1 cut(s) 912
Fsp4HI GCNGC 9 cut(s) 192, 642, 1158, 1250, 1286, 1322, 1388, 1632, 1881
FspBI CTAG 9 cut(s) 54, 543, 918, 1266, 1302, 1338, 1598, 1982, 1994
GlaI GCGC 2 cut(s) 758, 1743
GluI GCNGC 9 cut(s) 192, 642, 1158, 1250, 1286, 1322, 1388, 1632, 1881
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 760
HapII CCGG 4 cut(s) 179, 720, 1534, 1649
HgaI GACGC 1 cut(s) 974
HhaI GCGC 2 cut(s) 759, 1744
Hin6I GCGC 2 cut(s) 757, 1742
HinP1I GCGC 2 cut(s) 757, 1742
HincII GTYRAC 1 cut(s) 1206
HindII GTYRAC 1 cut(s) 1206
HindIII AAGCTT 4 cut(s) 228, 296, 581, 593
HinfI GANTC 2 cut(s) 214, 244
HpaII CCGG 4 cut(s) 179, 720, 1534, 1649
HphI GGTGA 5 cut(s) 373, 1038, 1212, 1233, 1248
Hpy166II GTNNAC 5 cut(s) 323, 428, 449, 775, 1206
Hpy188I TCNGA 8 cut(s) 65, 108, 160, 705, 859, 1797, 1911, 2089
Hpy8I GTNNAC 5 cut(s) 323, 428, 449, 775, 1206
HpyAV CCTTC 7 cut(s) 68, 401, 677, 923, 1364, 1533, 2028
HpyCH4III ACNGT 7 cut(s) 305, 730, 815, 824, 1035, 1621, 1969
HpyCH4IV ACGT 1 cut(s) 1381
HpyF10VI GCNNNNNNNGC 8 cut(s) 388, 1061, 1132, 1154, 1258, 1285, 1321, 1862
HpySE526I ACGT 1 cut(s) 1381
HspAI GCGC 2 cut(s) 757, 1742
KroI GCCGGC 1 cut(s) 1533
KroNI GCCGGC 1 cut(s) 1535
Ksp22I TGATCA 2 cut(s) 415, 2107
Kzo9I GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
LmnI GCTCC 1 cut(s) 907
Lsp1109I GCAGC 9 cut(s) 178, 653, 1144, 1236, 1272, 1308, 1399, 1618, 1892
LweI GCATC 4 cut(s) 131, 164, 754, 1169
MaeI CTAG 9 cut(s) 54, 543, 918, 1266, 1302, 1338, 1598, 1982, 1994
MaeII ACGT 1 cut(s) 1381
MaeIII GTNAC 5 cut(s) 43, 439, 709, 1078, 1621
MalI GATC 7 cut(s) 417, 588, 707, 1180, 1399, 1613, 2109
MboI GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
MboII GAAGA 5 cut(s) 986, 1230, 1453, 2038, 2041
MhlI GDGCHC 4 cut(s) 179, 325, 912, 1111
MluCI AATT 8 cut(s) 78, 162, 913, 1112, 1732, 1919, 1956, 2043
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 1375
MroNI GCCGGC 1 cut(s) 1533
MroXI GAANNNNTTC 2 cut(s) 78, 1095
MseI TTAA 6 cut(s) 257, 300, 465, 1119, 1413, 2128
MslI CAYNNNNRTG 3 cut(s) 354, 456, 1001
MspI CCGG 4 cut(s) 179, 720, 1534, 1649
MspR9I CCNGG 6 cut(s) 179, 209, 384, 568, 1649, 1650
Mva1269I GAATGC 2 cut(s) 1582, 1856
MvaI CCWGG 3 cut(s) 209, 384, 568
MvnI CGCG 1 cut(s) 1742
MwoI GCNNNNNNNGC 8 cut(s) 388, 1061, 1132, 1154, 1258, 1285, 1321, 1862
NaeI GCCGGC 1 cut(s) 1535
NciI CCSGG 3 cut(s) 179, 1649, 1650
NdeI CATATG 1 cut(s) 1674
NdeII GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
NgoMIV GCCGGC 1 cut(s) 1533
NheI GCTAGC 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 1499, 2064
NmuCI GTSAC 3 cut(s) 43, 439, 1078
NspI RCATGY 2 cut(s) 339, 426
PaeR7I CTCGAG 1 cut(s) 83
PctI GAATGC 2 cut(s) 1582, 1856
PdiI GCCGGC 1 cut(s) 1535
PdmI GAANNNNTTC 2 cut(s) 78, 1095
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 1149
PkrI GCNGC 9 cut(s) 193, 643, 1159, 1251, 1287, 1323, 1389, 1633, 1882
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 2062
PshAI GACNNNNGTC 2 cut(s) 218, 785
Psp124BI GAGCTC 1 cut(s) 912
Psp5II RGGWCCY 1 cut(s) 2062
Psp6I CCWGG 3 cut(s) 207, 382, 566
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 207, 382, 566
PspN4I GGNNCC 2 cut(s) 1499, 2064
PspPI GGNCC 1 cut(s) 2062
PspPPI RGGWCCY 1 cut(s) 2062
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 857
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 2 cut(s) 884, 1516
RsaNI GTAC 2 cut(s) 883, 1515
RseI CAYNNNNRTG 3 cut(s) 354, 456, 1001
SacI GAGCTC 1 cut(s) 912
SaqAI TTAA 6 cut(s) 257, 300, 465, 1119, 1413, 2128
SatI GCNGC 9 cut(s) 192, 642, 1158, 1250, 1286, 1322, 1388, 1632, 1881
Sau3AI GATC 7 cut(s) 415, 586, 705, 1178, 1397, 1611, 2107
Sau96I GGNCC 1 cut(s) 2062
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 6 cut(s) 179, 209, 384, 568, 1649, 1650
SduI GDGCHC 4 cut(s) 179, 325, 912, 1111
SfaNI GCATC 4 cut(s) 131, 164, 754, 1169
SfcI CTRYAG 4 cut(s) 768, 1133, 1528, 1571
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 2062
SlaI CTCGAG 1 cut(s) 83
SmaI CCCGGG 1 cut(s) 1650
SmiMI CAYNNNNRTG 3 cut(s) 354, 456, 1001
SmlI CTYRAG 2 cut(s) 83, 578
SmoI CTYRAG 2 cut(s) 83, 578
SpeI ACTAGT 1 cut(s) 1597
Sse9I AATT 8 cut(s) 78, 162, 913, 1112, 1732, 1919, 1956, 2043
SsiI CCGC 1 cut(s) 1259
SspMI CTAG 9 cut(s) 54, 543, 918, 1266, 1302, 1338, 1598, 1982, 1994
SstI GAGCTC 1 cut(s) 912
StyD4I CCNGG 6 cut(s) 177, 207, 382, 566, 1647, 1648
TaaI ACNGT 7 cut(s) 305, 730, 815, 824, 1035, 1621, 1969
TaiI ACGT 1 cut(s) 1384
TaqI TCGA 6 cut(s) 27, 84, 235, 817, 1760, 2018
TasI AATT 8 cut(s) 78, 162, 913, 1112, 1732, 1919, 1956, 2043
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 6 cut(s) 257, 300, 465, 1119, 1413, 2128
Tru9I TTAA 6 cut(s) 257, 300, 465, 1119, 1413, 2128
TscAI CASTG 5 cut(s) 325, 622, 690, 735, 1083
TseFI GTSAC 3 cut(s) 43, 439, 1078
TseI GCWGC 9 cut(s) 191, 641, 1157, 1249, 1285, 1321, 1387, 1631, 1880
Tsp45I GTSAC 3 cut(s) 43, 439, 1078
TspMI CCCGGG 1 cut(s) 1648
TspRI CASTG 5 cut(s) 325, 622, 690, 735, 1083
Tth111I GACNNNGTC 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 1149
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 2062
XapI RAATTY 2 cut(s) 78, 1956
XbaI TCTAGA 1 cut(s) 917
XceI RCATGY 2 cut(s) 339, 426
XhoI CTCGAG 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 1648
XmiI GTMKAC 2 cut(s) 427, 774
XmnI GAANNNNTTC 2 cut(s) 78, 1095
XspI CTAG 9 cut(s) 54, 543, 918, 1266, 1302, 1338, 1598, 1982, 1994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.