MD01G1214900.v1.1

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0003518
Physical Location & Seq
Reverse (-)
30821899 .. 30823704
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1214900.v1.1.491

Sequence Viewer

Length: 207 bp
ATGGCGGCAATGAACTCGTTATCTTTTGGAGTTGTTGCAATTATTGCCATCCTTTACGCTGTTGTTTTGCCCATGGCTCATGCGACCAGGTTGGCTCCGGCACCGGCACCGGCTCCGGCATTAACAAGCGATGGGACAACAATTGACCAAGGGATAGCATACGGTCTGATGTTACTGGCACTAGTGCTCACATATCTCATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

69

Amino Acids

6.98

Weight (kDa)

5.94

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 34 - 68 4.1e-18 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 100, 106
AciI CCGC 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 189
BanI GGYRCC 2 cut(s) 100, 106
Bbv12I GWGCWC 1 cut(s) 189
BccI CCATC 2 cut(s) 56, 125
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 4 cut(s) 96, 102, 108, 114
BmrFI CCNGG 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 72, 148
Bse118I RCCGGY 2 cut(s) 103, 109
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 72, 148
BseGI GGATG 2 cut(s) 48, 198
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 180
BshNI GGYRCC 2 cut(s) 100, 106
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 4 cut(s) 98, 104, 110, 116
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 4 cut(s) 96, 102, 108, 114
BspT107I GGYRCC 2 cut(s) 100, 106
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 2 cut(s) 103, 109
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 2 cut(s) 103, 109
BssECI CCNNGG 2 cut(s) 72, 148
BssT1I CCWWGG 2 cut(s) 72, 148
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 48, 198
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 48, 198
Cfr10I RCCGGY 2 cut(s) 103, 109
CsiI ACCWGGT 1 cut(s) 86
CviAII CATG 2 cut(s) 73, 80
CviJI RGCY 3 cut(s) 77, 95, 113
CviKI_1 RGCY 3 cut(s) 77, 95, 113
Eco130I CCWWGG 2 cut(s) 72, 148
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 72, 148
ErhI CCWWGG 2 cut(s) 72, 148
FaeI CATG 2 cut(s) 76, 83
FaiI YATR 4 cut(s) 74, 81, 160, 193
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 72, 79
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 35, 185
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 6
HapII CCGG 4 cut(s) 98, 104, 110, 116
Hin1II CATG 2 cut(s) 76, 83
HpaII CCGG 4 cut(s) 98, 104, 110, 116
Hpy188I TCNGA 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 76, 83
LmnI GCTCC 2 cut(s) 100, 118
LpnPI CCDG 7 cut(s) 73, 100, 111, 117, 123, 129, 161
MabI ACCWGGT 1 cut(s) 86
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 171
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 39, 141
MseI TTAA 1 cut(s) 122
MspI CCGG 4 cut(s) 98, 104, 110, 116
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 2 cut(s) 76, 83
NlaIV GGNNCC 4 cut(s) 96, 102, 108, 114
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 96, 102, 108, 114
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 189
SetI ASST 1 cut(s) 92
SexAI ACCWGGT 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 2 cut(s) 39, 141
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 72, 148
TaaI ACNGT 1 cut(s) 164
TasI AATT 2 cut(s) 39, 141
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 26
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.