Rw1G038400

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003518
Physical Location & Seq
Reverse (-)
65958244 .. 65959244
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038400.1

Sequence Viewer

Length: 201 bp
ATGGCTGTTAATGCTGCACCATTTAACGGAATGGTTGGCGTCATTGCACTCATTTTCGCCGTCATTTTGCCCATGATTCATGCAGCCGGCCTGGCTCCGGCTCCGGCTCTGGCTCCGACAAGCGATGGCACGGCAATAGACCAAGGGATAGCATACATTCTAATGCTGCTAGCGTTGGTTCTCACATACCTGATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

66

Amino Acids

6.71

Weight (kDa)

5.04

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 32 - 66 2.9e-19 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 26, 97
AjnI CCWGG 1 cut(s) 90
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 14, 83, 166
AsuNHI GCTAGC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 95, 153
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 44, 147
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 3 cut(s) 15, 84, 167
BlsI GCNGC 3 cut(s) 16, 85, 168
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 96, 102, 114
BmrFI CCNGG 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 97
Bse118I RCCGGY 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 26, 97
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 95, 153
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 87, 98, 104
BslI CCNNNNNNNGG 2 cut(s) 26, 97
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 192
BspANI GGCC 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 96, 102, 114
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 88, 171
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 11, 92
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 95, 153
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 88, 171
Cfr10I RCCGGY 1 cut(s) 86
CseI GACGC 1 cut(s) 28
CviAII CATG 2 cut(s) 73, 80
CviJI RGCY 7 cut(s) 5, 86, 90, 95, 101, 107, 113
CviKI_1 RGCY 7 cut(s) 5, 86, 90, 95, 101, 107, 113
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 76, 83
FaiI YATR 4 cut(s) 74, 81, 154, 187
FatI CATG 2 cut(s) 72, 79
Fnu4HI GCNGC 3 cut(s) 15, 84, 167
Fsp4HI GCNGC 3 cut(s) 15, 84, 167
FspBI CTAG 1 cut(s) 170
GluI GCNGC 3 cut(s) 15, 84, 167
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 87, 98, 104
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 76, 83
HinfI GANTC 1 cut(s) 76
HpaII CCGG 3 cut(s) 87, 98, 104
Hpy188I TCNGA 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 17, 47, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 92
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 76, 83
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 3 cut(s) 100, 106, 118
LpnPI CCDG 6 cut(s) 77, 95, 100, 104, 111, 117
Lsp1109I GCAGC 2 cut(s) 95, 153
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 140
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 2 cut(s) 9, 24
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 3 cut(s) 87, 98, 104
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 11, 92
NaeI GCCGGC 1 cut(s) 88
NdeII GATC 1 cut(s) 192
NgoMIV GCCGGC 1 cut(s) 86
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 2 cut(s) 76, 83
NlaIV GGNNCC 3 cut(s) 96, 102, 114
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 16, 85, 168
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 96, 102, 114
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 9, 24
SatI GCNGC 3 cut(s) 15, 84, 167
Sau3AI GATC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 92
SetI ASST 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 161
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 142
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 9, 24
Tru9I TTAA 2 cut(s) 9, 24
TseI GCWGC 3 cut(s) 14, 83, 166
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 42
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.