Rh7CG157000

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003518
Physical Location & Seq
Forward (+)
12879186 .. 12880210
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG157000.1

Sequence Viewer

Length: 291 bp
ATGGCGTTTCCCAGGCTCAGGCTTTCCCGACGTGTTGTGCTTGTGGCTATTGTGGCTCTGTTTTGTGCTATGGCCATTGACTATATTGAGGGTAAGGAGTCTCCGGCCAAGCCCGCACCAAACCAAGCAAATAAATCAGCTTCTCCGGCTCCTTCTCCTTCGGCTGAAGCTCCAGCTCCCGGCCCCAGCAGCGATGGGATTTTGATTGATCAAGGAATTGCATGCGTGCTGATGTTGGTGGCCTTGGTGCTCACATACCTCATCCATGATGCAGATCTTCCCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

96

Amino Acids

10.07

Weight (kDa)

6.53

Isoelectric Point (pI)

73.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 57 - 89 1e-13 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 2 cut(s) 72, 105
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 18, 179
AflIII ACRYGT 1 cut(s) 31
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 140, 170, 176
AluI AGCT 3 cut(s) 140, 170, 176
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 4 cut(s) 72, 105, 181, 240
ApeKI GCWGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 180
BalI TGGCCA 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 105
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 13, 180
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 150, 184
BmrFI CCNGG 2 cut(s) 13, 180
BmsI GCATC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 11, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 179
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 11, 243
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 18, 179
BseMII CTCAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 185
BshFI GGCC 4 cut(s) 74, 107, 183, 242
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 3 cut(s) 104, 146, 180
BslI CCNNNNNNNGG 2 cut(s) 18, 179
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 4 cut(s) 74, 107, 183, 242
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 208, 274
BspACI CCGC 1 cut(s) 114
BspANI GGCC 4 cut(s) 74, 107, 183, 242
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 150, 184
BssECI CCNNGG 2 cut(s) 11, 243
BssMI GATC 2 cut(s) 208, 274
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 114, 223, 227
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 211, 277
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 208, 274
BstMWI GCNNNNNNNGC 4 cut(s) 53, 113, 146, 189
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 11, 178
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 4 cut(s) 74, 107, 183, 242
BtgZI GCGATG 1 cut(s) 207
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 261
Cac8I GCNNGC 3 cut(s) 114, 223, 227
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 2 cut(s) 222, 266
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 210, 276
DpnII GATC 2 cut(s) 208, 274
EaeI YGGCCR 2 cut(s) 72, 105
Eco130I CCWWGG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 225, 269
FaiI YATR 5 cut(s) 71, 84, 223, 256, 267
FatI CATG 2 cut(s) 221, 265
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 190
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 4 cut(s) 74, 107, 183, 242
HapII CCGG 3 cut(s) 104, 146, 180
Hin1II CATG 2 cut(s) 225, 269
HinfI GANTC 1 cut(s) 98
HpaII CCGG 3 cut(s) 104, 146, 180
Hpy188III TCNNGA 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 162, 168
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 221, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 113, 146, 189
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 225, 269
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 274
LmnI GCTCC 3 cut(s) 154, 175, 181
LpnPI CCDG 7 cut(s) 4, 25, 117, 159, 186, 193, 199
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 31
MalI GATC 2 cut(s) 210, 276
MboI GATC 2 cut(s) 208, 274
MboII GAAGA 1 cut(s) 269
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 2 cut(s) 82, 269
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 3 cut(s) 104, 146, 180
MspR9I CCNGG 2 cut(s) 13, 180
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 53, 113, 146, 189
NciI CCSGG 1 cut(s) 180
NdeII GATC 2 cut(s) 208, 274
NlaIII CATG 2 cut(s) 225, 269
NlaIV GGNNCC 2 cut(s) 150, 184
NspI RCATGY 1 cut(s) 225
PaeI GCATGC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 150, 184
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 274
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 208, 274
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 13, 180
SduI GDGCHC 1 cut(s) 252
SetI ASST 5 cut(s) 34, 142, 172, 178, 261
SfaNI GCATC 1 cut(s) 259
SphI GCATGC 1 cut(s) 225
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 11, 178
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 34
TasI AATT 1 cut(s) 216
TseI GCWGC 1 cut(s) 189
XceI RCATGY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.