Rh1CG410600

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003518
Physical Location & Seq
Reverse (-)
67400900 .. 67402143
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG410600.1

Sequence Viewer

Length: 300 bp
ATGGCTGTTAATGCTGCACCATTTAACGGAATGGTTGGCGTCGTTGCTCTCATTTTCGCCGTCATTTTGCCCATGATTCATGCAGCCGGCCTGGCTCCGGCTCCGGCTCCTACAAGCGATGGTAAGCTTTCTTTGCTTTTCTTAGAGAAAAATAAATGTTTCTGTATGATGTTTTCGTTAGGGGAACTTCCGGAAATAGCTTGGATTGTTAAGTTTTGTACTTGTAAAATTGTTGATAGAATGCAACTTTTAACGTATGAAATGTGCACATTTCATACCCTGCAAACGTTCATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

6.69

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 190
AclI AACGTT 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 26, 97
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 127, 200
AluI AGCT 2 cut(s) 127, 200
Alw21I GWGCWC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 1 cut(s) 88
ApaLI GTGCAC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 14, 83
BaeGI GKGCMC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 15, 84
BlsI GCNGC 2 cut(s) 16, 85
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 96, 102, 108
BmrFI CCNGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 97
Bse118I RCCGGY 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 26, 97
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 4 cut(s) 87, 98, 104, 191
BslI CCNNNNNNNGG 2 cut(s) 26, 97
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 190
BspANI GGCC 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 96, 102, 108
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 11, 92, 133
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 86
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 73, 80
CviJI RGCY 8 cut(s) 5, 86, 90, 95, 101, 107, 127, 200
CviKI_1 RGCY 8 cut(s) 5, 86, 90, 95, 101, 107, 127, 200
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 76, 83
FaiI YATR 7 cut(s) 74, 81, 167, 258, 276, 293, 295
FatI CATG 2 cut(s) 72, 79
Fnu4HI GCNGC 2 cut(s) 15, 84
Fsp4HI GCNGC 2 cut(s) 15, 84
GluI GCNGC 2 cut(s) 15, 84
HaeIII GGCC 1 cut(s) 90
HapII CCGG 4 cut(s) 87, 98, 104, 191
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 76, 83
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 76
HpaII CCGG 4 cut(s) 87, 98, 104, 191
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 44
HpyCH4IV ACGT 2 cut(s) 254, 287
HpyCH4V TGCA 5 cut(s) 17, 83, 244, 267, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 92, 133
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 2 cut(s) 254, 287
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 76, 83
Kpn2I TCCGGA 1 cut(s) 190
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 100, 106, 112
LpnPI CCDG 7 cut(s) 77, 100, 104, 111, 117, 204, 293
Lsp1109I GCAGC 1 cut(s) 95
MaeII ACGT 2 cut(s) 254, 287
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 1 cut(s) 228
MroI TCCGGA 1 cut(s) 190
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 4 cut(s) 9, 24, 210, 251
MspI CCGG 4 cut(s) 87, 98, 104, 191
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 11, 92, 133
NaeI GCCGGC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 76, 83
NlaIV GGNNCC 3 cut(s) 96, 102, 108
PctI GAATGC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 16, 85
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 96, 102, 108
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 9, 24, 210, 251
SatI GCNGC 2 cut(s) 15, 84
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 269
SetI ASST 4 cut(s) 129, 202, 257, 290
Sse9I AATT 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 2 cut(s) 257, 290
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 4 cut(s) 9, 24, 210, 251
Tru9I TTAA 4 cut(s) 9, 24, 210, 251
TseI GCWGC 2 cut(s) 14, 83
TspDTI ATGAA 4 cut(s) 68, 263, 273, 280
TspGWI ACGGA 1 cut(s) 42
VneI GTGCAC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.