MD07G1284600.v1.1

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003518
Physical Location & Seq
Reverse (-)
34712887 .. 34714121
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1284600.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGCGGCCATGAACTCATCATCTTTTGGTGTGGTTGCAATTATTGCCACCTTTTACGCTATCGTTCTGCCCGTGGCTCGTGCGACCAGCTTGGCTCCTGCACCGGCACCGGCACCGGCACCGACATCGGTTTCGGCATTAACAAGCGATGGGACAACAATAGACCAAGGGATAGCATACGCTCTAATGCTGCTGGCATTAGTGCTCACATATCTCATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

75

Amino Acids

7.46

Weight (kDa)

5.19

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 38 - 74 5.5e-16 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 106, 112, 118
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 6
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 207
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
BanI GGYRCC 3 cut(s) 106, 112, 118
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BisI GCNGC 2 cut(s) 6, 191
BlsI GCNGC 2 cut(s) 7, 192
BmiI GGNNCC 4 cut(s) 96, 108, 114, 120
BsaJI CCNNGG 2 cut(s) 72, 166
Bse118I RCCGGY 3 cut(s) 103, 109, 115
BseDI CCNNGG 2 cut(s) 72, 166
BseGI GGATG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 3 cut(s) 106, 112, 118
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 104, 110, 116
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 207
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 4 cut(s) 96, 108, 114, 120
BspT107I GGYRCC 3 cut(s) 106, 112, 118
BsrFI RCCGGY 3 cut(s) 103, 109, 115
BssAI RCCGGY 3 cut(s) 103, 109, 115
BssECI CCNNGG 2 cut(s) 72, 166
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 195
Cfr10I RCCGGY 3 cut(s) 103, 109, 115
CviAII CATG 1 cut(s) 10
CviJI RGCY 4 cut(s) 8, 77, 90, 95
CviKI_1 RGCY 4 cut(s) 8, 77, 90, 95
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 178, 211
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 6, 191
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 6, 191
GluI GCNGC 2 cut(s) 6, 191
HaeIII GGCC 1 cut(s) 8
HapII CCGG 3 cut(s) 104, 110, 116
Hin1II CATG 1 cut(s) 13
HpaII CCGG 3 cut(s) 104, 110, 116
HpyCH4V TGCA 2 cut(s) 38, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 13
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 100, 111, 117, 123, 129, 179
Lsp1109I GCAGC 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 39
MseI TTAA 1 cut(s) 140
MspI CCGG 3 cut(s) 104, 110, 116
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 4 cut(s) 96, 108, 114, 120
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 2 cut(s) 7, 192
PspN4I GGNNCC 4 cut(s) 96, 108, 114, 120
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 6, 191
SduI GDGCHC 1 cut(s) 207
SetI ASST 2 cut(s) 53, 92
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 5
StyI CCWWGG 1 cut(s) 166
TasI AATT 1 cut(s) 39
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.