Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001232.1

Orthogroup ID

OG0003518

Physical Location & Seq

Genomic Coordinates Reverse (-)

18295 .. 18940

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001232.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atggctgttaatgctgcaccatttaacggaatggttggcgtcattgcactcattttcgccgtcattttgcccatgattcatgcagctggcctggctccggctccggctcccgctctggctccgacaagcgatggcacggcaatagaccaagggatagcatacattctaatgctgctgtcgttggttctcacatacctgatccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AGP

Protein Analysis

68

Amino Acids

6.9

Weight (kDa)

5.04

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24105
fragaria_vesca	FvH4_1g06710 FvH4_5g03950 FvH4_7g30990
malus_domestica	MD01G1214900.v1.1 MD02G1072000.v1.1 MD07G1284600.v1.1 MD15G1201800.v1.1
prunus_persica	Prupe.2G306800_v2.0.a1 Prupe.5G114400_v2.0.a1 Prupe.7G215700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380071 RchiOBHm_Chr2g0092451
rosa_laevigata	RLG00000004109
rosa_multiflora	Rmu_sc0001232.1_g000005 Rmu_sc0004184.1_g000003
rosa_roxburghii	Rroxscaffold_2G00149110 Rroxscaffold_3G00260370 Rroxscaffold_4G00279740
rosa_rugosa	Rorug02G0026400 Rorug07G0024100
rosa_samantha	Rh1BG397300 Rh1CG410600 Rh1DG428100 Rh2AG072300 Rh2BG072700 Rh2CG073900 Rh2DG070700 Rh7AG151800 Rh7BG153500 Rh7CG157000 Rh7DG152800
rosa_wichuraiana	Rw1G038400 Rw2G006040 Rw7G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	26, 97
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	14, 83, 172
BbvI	GCAGC	2 cut(s)	95, 159
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	2 cut(s)	44, 153
BciT130I	CCWGG	1 cut(s)	92
BisI	GCNGC	3 cut(s)	15, 84, 173
BlsI	GCNGC	3 cut(s)	16, 85, 174
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	4 cut(s)	96, 102, 108, 120
BmrFI	CCNGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 97
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	26, 97
BseMI	GCAATG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	95, 159
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	98, 104
BslI	CCNNNNNNNGG	2 cut(s)	26, 97
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	96, 102, 108, 120
BspPI	GGATC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 92
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	95, 159
BsuRI	GGCC	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	88
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	73, 80
CviJI	RGCY	7 cut(s)	5, 86, 90, 95, 101, 107, 119
CviKI_1	RGCY	7 cut(s)	5, 86, 90, 95, 101, 107, 119
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	76, 83
FaiI	YATR	4 cut(s)	74, 81, 160, 193
FatI	CATG	2 cut(s)	72, 79
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	15, 84, 173
Fsp4HI	GCNGC	3 cut(s)	15, 84, 173
GluI	GCNGC	3 cut(s)	15, 84, 173
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	98, 104
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	76, 83
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	98, 104
Hpy188I	TCNGA	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	17, 47, 83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 92
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	76, 83
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	100, 106, 112, 124
LpnPI	CCDG	6 cut(s)	72, 77, 101, 104, 111, 117
Lsp1109I	GCAGC	2 cut(s)	95, 159
MalI	GATC	1 cut(s)	200
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	146
MseI	TTAA	2 cut(s)	9, 24
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	98, 104
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	11, 92
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	76, 83
NlaIV	GGNNCC	4 cut(s)	96, 102, 108, 120
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	16, 85, 174
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	4 cut(s)	96, 102, 108, 120
PvuII	CAGCTG	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	9, 24
SatI	GCNGC	3 cut(s)	15, 84, 173
Sau3AI	GATC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	2 cut(s)	88, 198
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	9, 24
Tru9I	TTAA	2 cut(s)	9, 24
TseI	GCWGC	3 cut(s)	14, 83, 172
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.