Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004184.1

Orthogroup ID

OG0003518

Physical Location & Seq

Genomic Coordinates Forward (+)

8693 .. 9332

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004184.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atggctgttaatgctgcaccatttaacggaatggttggcgtcattgcactcattttcgccgtcattttgcccatgattcatgcagccggcctggctccggctccggctctggctccgacaagcgatggcacggcaatagaccaagggatagcatacattctaatgctgctggcgttggttctcacatacctgatccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AGP

Protein Analysis

66

Amino Acids

6.71

Weight (kDa)

5.04

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24105
fragaria_vesca	FvH4_1g06710 FvH4_5g03950 FvH4_7g30990
malus_domestica	MD01G1214900.v1.1 MD02G1072000.v1.1 MD07G1284600.v1.1 MD15G1201800.v1.1
prunus_persica	Prupe.2G306800_v2.0.a1 Prupe.5G114400_v2.0.a1 Prupe.7G215700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380071 RchiOBHm_Chr2g0092451
rosa_laevigata	RLG00000004109
rosa_multiflora	Rmu_sc0001232.1_g000005 Rmu_sc0004184.1_g000003
rosa_roxburghii	Rroxscaffold_2G00149110 Rroxscaffold_3G00260370 Rroxscaffold_4G00279740
rosa_rugosa	Rorug02G0026400 Rorug07G0024100
rosa_samantha	Rh1BG397300 Rh1CG410600 Rh1DG428100 Rh2AG072300 Rh2BG072700 Rh2CG073900 Rh2DG070700 Rh7AG151800 Rh7BG153500 Rh7CG157000 Rh7DG152800
rosa_wichuraiana	Rw1G038400 Rw2G006040 Rw7G012980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	26, 97
AjnI	CCWGG	1 cut(s)	90
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	14, 83, 166
BbvI	GCAGC	2 cut(s)	95, 153
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	44, 147
BciT130I	CCWGG	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	15, 84, 167
BlsI	GCNGC	3 cut(s)	16, 85, 168
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	96, 102, 114
BmrFI	CCNGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 97
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	26, 97
BseMI	GCAATG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	95, 153
BshFI	GGCC	1 cut(s)	90
BsiSI	CCGG	3 cut(s)	87, 98, 104
BslI	CCNNNNNNNGG	2 cut(s)	26, 97
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	192
BspANI	GGCC	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	96, 102, 114
BspPI	GGATC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	88, 171
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 92
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	95, 153
BsuRI	GGCC	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	88, 171
Cfr10I	RCCGGY	1 cut(s)	86
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	73, 80
CviJI	RGCY	7 cut(s)	5, 86, 90, 95, 101, 107, 113
CviKI_1	RGCY	7 cut(s)	5, 86, 90, 95, 101, 107, 113
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	76, 83
FaiI	YATR	4 cut(s)	74, 81, 154, 187
FatI	CATG	2 cut(s)	72, 79
Fnu4HI	GCNGC	3 cut(s)	15, 84, 167
Fsp4HI	GCNGC	3 cut(s)	15, 84, 167
GluI	GCNGC	3 cut(s)	15, 84, 167
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	87, 98, 104
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	76, 83
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	3 cut(s)	87, 98, 104
Hpy188I	TCNGA	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	17, 47, 83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 92
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	76, 83
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	100, 106, 118
LpnPI	CCDG	7 cut(s)	77, 95, 100, 104, 111, 117, 155
Lsp1109I	GCAGC	2 cut(s)	95, 153
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	140
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	2 cut(s)	9, 24
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	3 cut(s)	87, 98, 104
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	11, 92
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	192
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	76, 83
NlaIV	GGNNCC	3 cut(s)	96, 102, 114
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	16, 85, 168
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	96, 102, 114
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	9, 24
SatI	GCNGC	3 cut(s)	15, 84, 167
Sau3AI	GATC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	9, 24
Tru9I	TTAA	2 cut(s)	9, 24
TseI	GCWGC	3 cut(s)	14, 83, 166
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.