RchiOBHm_Chr1g0380071

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003518
Physical Location & Seq
Reverse (-)
65851648 .. 65852575
928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60337

Sequence Viewer

Length: 207 bp
ATGGCTGTTAATGCTGCACCATTTAACGGAATGGTTGGCGTCATTGCACTCATTTTCGCCGTCATTTTGCCCATGATTCATGCAGCTGGCCTGGCTCCGGCTCCGGCTCCGGCTCTGGCTCCGACAAGCGATGGCACGGCAATTGACCAAGGGATAGCATACATTCTAATGCTGCTGGCGTTGGTTCTCACATACCTGATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

68

Amino Acids

6.88

Weight (kDa)

5.04

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 34 - 68 2.5e-19 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 26, 97
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AlwI GGATC 1 cut(s) 193
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 14, 83, 172
BbvI GCAGC 2 cut(s) 95, 159
BccI CCATC 1 cut(s) 125
BceAI ACGGC 2 cut(s) 44, 153
BciT130I CCWGG 1 cut(s) 92
BisI GCNGC 3 cut(s) 15, 84, 173
BlsI GCNGC 3 cut(s) 16, 85, 174
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 4 cut(s) 96, 102, 108, 120
BmrFI CCNGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 97
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 26, 97
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 95, 159
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 98, 104, 110
BslI CCNNNNNNNGG 2 cut(s) 26, 97
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 198
BspANI GGCC 1 cut(s) 90
BspLI GGNNCC 4 cut(s) 96, 102, 108, 120
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 88, 177
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 11, 92
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 95, 159
BsuRI GGCC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 88, 177
CseI GACGC 1 cut(s) 28
CviAII CATG 2 cut(s) 73, 80
CviJI RGCY 8 cut(s) 5, 86, 90, 95, 101, 107, 113, 119
CviKI_1 RGCY 8 cut(s) 5, 86, 90, 95, 101, 107, 113, 119
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 76, 83
FaiI YATR 4 cut(s) 74, 81, 160, 193
FatI CATG 2 cut(s) 72, 79
Fnu4HI GCNGC 3 cut(s) 15, 84, 173
Fsp4HI GCNGC 3 cut(s) 15, 84, 173
GluI GCNGC 3 cut(s) 15, 84, 173
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 98, 104, 110
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 76, 83
HinfI GANTC 1 cut(s) 76
HpaII CCGG 3 cut(s) 98, 104, 110
Hpy188I TCNGA 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 17, 47, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 92
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 76, 83
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 4 cut(s) 100, 106, 112, 124
LpnPI CCDG 8 cut(s) 72, 77, 101, 104, 111, 117, 123, 161
Lsp1109I GCAGC 2 cut(s) 95, 159
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MfeI CAATTG 1 cut(s) 141
MluCI AATT 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 146
MseI TTAA 2 cut(s) 9, 24
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 98, 104, 110
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 11, 92
NdeII GATC 1 cut(s) 198
NlaIII CATG 2 cut(s) 76, 83
NlaIV GGNNCC 4 cut(s) 96, 102, 108, 120
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 3 cut(s) 16, 85, 174
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 96, 102, 108, 120
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 9, 24
SatI GCNGC 3 cut(s) 15, 84, 173
Sau3AI GATC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 92
SetI ASST 2 cut(s) 88, 198
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 148
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 9, 24
Tru9I TTAA 2 cut(s) 9, 24
TseI GCWGC 3 cut(s) 14, 83, 172
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.