FvH4_7g30990

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003518
Physical Location & Seq
Reverse (-)
22459906 .. 22460996
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30990.t1

Sequence Viewer

Length: 195 bp
ATGGCGGTAAATGCTGCATCATTCAACAGAGTGGTTGCCATCTTTGCTCTCATTTTTGCCATCGTTTTACCCATGTCTAATGCTGCAGGCCTGTCTCCGGCTCCGGCTCCGACAAGTGATGGCACGGCAATAGACCAGGGGATAGCATACATCCTAATGCTGCTGGCGTTGGTTCTCACATATCTGATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

65

Amino Acids

6.61

Weight (kDa)

5.19

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 32 - 64 3.5e-19 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 14, 83, 160
BbvI GCAGC 2 cut(s) 70, 147
BccI CCATC 3 cut(s) 47, 68, 113
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 15, 84, 161
BlsI GCNGC 3 cut(s) 16, 85, 162
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 102, 108
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 70, 147
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 98, 104
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 102, 108
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 88, 165
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 11, 44
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 70, 147
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 88, 165
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 90, 101, 107
CviKI_1 RGCY 3 cut(s) 90, 101, 107
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 76
FaiI YATR 3 cut(s) 74, 148, 181
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 15, 84, 161
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 15, 84, 161
GluI GCNGC 3 cut(s) 15, 84, 161
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 98, 104
Hin1II CATG 1 cut(s) 76
HpaII CCGG 2 cut(s) 98, 104
Hpy188I TCNGA 2 cut(s) 111, 186
HpyCH4V TGCA 2 cut(s) 17, 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 44
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 106, 112
LpnPI CCDG 7 cut(s) 72, 104, 111, 117, 122, 149, 149
Lsp1109I GCAGC 2 cut(s) 70, 147
LweI GCATC 1 cut(s) 26
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 98, 104
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 11, 44
NdeII GATC 1 cut(s) 186
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 102, 108
PceI AGGCCT 1 cut(s) 90
PkrI GCNGC 3 cut(s) 16, 85, 162
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 102, 108
PstI CTGCAG 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 3 cut(s) 15, 84, 161
Sau3AI GATC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 137
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 155
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 1 cut(s) 5
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 135
TseI GCWGC 3 cut(s) 14, 83, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.