RLG00000004109

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003518
Physical Location & Seq
Reverse (-)
56292377 .. 56294466
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004109

Sequence Viewer

Length: 549 bp
ATGGGAGAGGGTGAAATGGGCCGGGCCGGAATCGATGGTAGCGGCTATGGCGCGAATCAGATTGGAGAGGGAGAGGGAATTGGCGGCGAGCTCGTCAAAGAAGCGGTCCATGGGGTCGGGTCATTGGCGTCAAAGAGGGTTTGGAGGTCGGAGAGAGTGGAATCAGAGATCGGTTGGGATTGGGTATTGGTGGGGTTTTCGAGGTGGCTGAGGTCTTCGTGCTCTGTGACTATTCGGGTTATGGTTTCTTCCATAGCTGATTTGGGTTTGAGGCTCAGGCTTTCCCGACGTGTTGTGGTTGTGGCTATTGTGGCTCTGTTTTGTGCTATGGCCGTTGACTATATTGAGGGTAAGGAGTCTCCTGCCAAGCCCGCACCAAACCAAGCAAAGAAATCAGCTTCTCCGGCTCCTTCTCCTTCGGCTGAAGCTCCAGCTCCCGGCCCCAGCAGCGATGGGATTTTGATTGATCAAGGAATTGCGTGCGTGCTGATGTTGGTGGCCTTGGTGCTCACATACCTCATCCATGATGCAGATCTTCCCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

183

Amino Acids

19.13

Weight (kDa)

5.73

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 143 - 175 1.6e-13 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AciI CCGC 4 cut(s) 42, 84, 104, 372
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 289
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 5 cut(s) 91, 257, 398, 428, 434
AluI AGCT 5 cut(s) 91, 257, 398, 428, 434
Alw21I GWGCWC 3 cut(s) 93, 224, 510
Alw26I GTCTC 1 cut(s) 363
AoxI GGCC 5 cut(s) 19, 24, 330, 439, 498
ApeKI GCWGC 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 19, 24, 106, 440
AsuC2I CCSGG 2 cut(s) 23, 438
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 3 cut(s) 93, 224, 510
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 459
BccI CCATC 2 cut(s) 29, 446
BceAI ACGGC 1 cut(s) 317
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 2 cut(s) 23, 438
BcoDI GTCTC 1 cut(s) 363
BglII AGATCT 1 cut(s) 532
BisI GCNGC 3 cut(s) 43, 85, 448
BlsI GCNGC 3 cut(s) 44, 86, 449
Bme1390I CCNGG 2 cut(s) 23, 438
Bme18I GGWCC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 4 cut(s) 19, 24, 106, 440
BmiI GGNNCC 2 cut(s) 408, 442
BmrFI CCNGG 2 cut(s) 23, 438
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 414
Bpu10I CCTNAGC 2 cut(s) 209, 275
BpuMI CCSGG 2 cut(s) 23, 438
Bsa29I ATCGAT 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 109, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse8I GATNNNNATC 1 cut(s) 531
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 109, 501
BseGI GGATG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 200, 289
BseXI GCAGC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 5 cut(s) 21, 26, 332, 441, 500
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 3 cut(s) 93, 224, 510
BsiSI CCGG 4 cut(s) 22, 27, 404, 438
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 363
BsnI GGCC 5 cut(s) 21, 26, 332, 441, 500
Bsp1286I GDGCHC 3 cut(s) 93, 224, 510
Bsp143I GATC 3 cut(s) 168, 466, 532
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 4 cut(s) 42, 84, 104, 372
BspANI GGCC 5 cut(s) 21, 26, 332, 441, 500
BspCNI CTCAG 2 cut(s) 201, 288
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 2 cut(s) 408, 442
BssECI CCNNGG 2 cut(s) 109, 501
BssMI GATC 3 cut(s) 168, 466, 532
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 109, 501
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 89, 372, 481, 485
BstDEI CTNAG 2 cut(s) 209, 275
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 519
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 171, 469, 535
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 3 cut(s) 168, 466, 532
BstMWI GCNNNNNNNGC 5 cut(s) 48, 311, 371, 404, 447
BstSCI CCNGG 2 cut(s) 21, 436
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 5 cut(s) 21, 26, 332, 441, 500
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 465
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 519
Cac8I GCNNGC 4 cut(s) 89, 372, 481, 485
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 19, 24, 106, 440
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 117
CviAII CATG 2 cut(s) 110, 524
DdeI CTNAG 2 cut(s) 209, 275
DpnI GATC 3 cut(s) 170, 468, 534
DpnII GATC 3 cut(s) 168, 466, 532
EaeI YGGCCR 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 109, 501
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 109, 501
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 2 cut(s) 109, 501
FaeI CATG 2 cut(s) 113, 527
FaiI YATR 8 cut(s) 48, 111, 242, 254, 329, 342, 514, 525
FatI CATG 2 cut(s) 109, 523
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 43, 85, 448
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 43, 85, 448
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 43, 85, 448
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 5 cut(s) 21, 26, 332, 441, 500
HapII CCGG 4 cut(s) 22, 27, 404, 438
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 2 cut(s) 113, 527
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 4 cut(s) 30, 55, 161, 356
HpaII CCGG 4 cut(s) 22, 27, 404, 438
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 60, 151, 166
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 420, 426
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 311, 371, 404, 447
HpyF3I CTNAG 2 cut(s) 209, 275
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 2 cut(s) 113, 527
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 168, 466, 532
LmnI GCTCC 3 cut(s) 412, 433, 439
LpnPI CCDG 8 cut(s) 35, 40, 262, 375, 417, 444, 451, 457
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 517
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 170, 468, 534
MboI GATC 3 cut(s) 168, 466, 532
MboII GAAGA 3 cut(s) 207, 240, 527
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 93, 224, 510
MluCI AATT 2 cut(s) 78, 474
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 9 cut(s) 61, 67, 129, 138, 195, 204, 264, 340, 527
MspI CCGG 4 cut(s) 22, 27, 404, 438
MspR9I CCNGG 2 cut(s) 23, 438
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 5 cut(s) 48, 311, 371, 404, 447
NciI CCSGG 2 cut(s) 23, 438
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 168, 466, 532
NlaIII CATG 2 cut(s) 113, 527
NlaIV GGNNCC 2 cut(s) 408, 442
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 30, 55, 161
PkrI GCNGC 3 cut(s) 44, 86, 449
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 408, 442
PspPI GGNCC 4 cut(s) 19, 24, 106, 440
PsuI RGATCY 1 cut(s) 532
SacI GAGCTC 1 cut(s) 93
SatI GCNGC 3 cut(s) 43, 85, 448
Sau3AI GATC 3 cut(s) 168, 466, 532
Sau96I GGNCC 4 cut(s) 19, 24, 106, 440
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 23, 438
SduI GDGCHC 3 cut(s) 93, 224, 510
SfaNI GCATC 1 cut(s) 517
SinI GGWCC 1 cut(s) 106
Sse9I AATT 2 cut(s) 78, 474
SsiI CCGC 4 cut(s) 42, 84, 104, 372
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 21, 436
StyI CCWWGG 2 cut(s) 109, 501
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 33, 200
TasI AATT 2 cut(s) 78, 474
TauI GCSGC 2 cut(s) 45, 87
TfiI GAWTC 3 cut(s) 30, 55, 161
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.