FvH4_5g03950

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003518
Physical Location & Seq
Reverse (-)
2361774 .. 2362234
461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03950.t1

Sequence Viewer

Length: 300 bp
ATGGCGTTTCCCAGGCTCAGGCTTTCTCAACGTCTTGTGGTTGTGGTTATTGTGGCTCTGTTTTGTGCTTTGGCCATTGATTACGTTGAGGGTAAGGAGTCTACACCAAAGGAAAAGAATTCAGCTTCTCCATCTCCATCATCATCTCCCTCTCCTGATAAAGCTCCGGCACCCGGCCCCAGCAGCGACGGGATTTTGATTGATCAAGGGATTGCATGTGTGCTGATGTTGCTAGCCTTGGTGCTTACATACCTCATCCATGATTCAGATCTTCCCAAGATAGAATGGATGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

100

Amino Acids

10.65

Weight (kDa)

5.29

Isoelectric Point (pI)

65.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 55 - 87 3.5e-14 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 18, 173
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 2 cut(s) 125, 164
AluI AGCT 2 cut(s) 125, 164
AoxI GGCC 2 cut(s) 72, 175
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 139, 145
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 174
BfaI CTAG 1 cut(s) 233
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 13, 174
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 171, 178
BmrFI CCNGG 2 cut(s) 13, 174
BmtI GCTAGC 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 11, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 173
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 11, 237
BseGI GGATG 2 cut(s) 255, 294
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 18, 173
BseMII CTCAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 2 cut(s) 74, 177
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 167, 174
BslI CCNNNNNNNGG 2 cut(s) 18, 173
BsnI GGCC 2 cut(s) 74, 177
Bsp143I GATC 2 cut(s) 202, 268
BspANI GGCC 2 cut(s) 74, 177
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 171, 178
BspOI GCTAGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 11, 237
BssMI GATC 2 cut(s) 202, 268
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 255, 294
BstKTI GATC 2 cut(s) 205, 271
BstMBI GATC 2 cut(s) 202, 268
BstMWI GCNNNNNNNGC 2 cut(s) 183, 229
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 2 cut(s) 11, 172
BstV1I GCAGC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 74, 177
BtsCI GGATG 2 cut(s) 255, 294
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 2 cut(s) 216, 260
CviJI RGCY 8 cut(s) 16, 22, 56, 74, 125, 164, 177, 236
CviKI_1 RGCY 8 cut(s) 16, 22, 56, 74, 125, 164, 177, 236
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 204, 270
DpnII GATC 2 cut(s) 202, 268
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 219, 263
FaiI YATR 3 cut(s) 217, 250, 261
FatI CATG 2 cut(s) 215, 259
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 184
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 74, 177
HapII CCGG 2 cut(s) 167, 174
Hin1II CATG 2 cut(s) 219, 263
HinfI GANTC 2 cut(s) 98, 263
HpaII CCGG 2 cut(s) 167, 174
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 31, 84
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 229
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 2 cut(s) 31, 84
Hsp92II CATG 2 cut(s) 219, 263
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 202, 268
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 4, 25, 168, 180, 187, 193
Lsp1109I GCAGC 1 cut(s) 195
MaeI CTAG 1 cut(s) 233
MaeII ACGT 2 cut(s) 31, 84
MalI GATC 2 cut(s) 204, 270
MboI GATC 2 cut(s) 202, 268
MboII GAAGA 1 cut(s) 263
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 82, 160, 263
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 2 cut(s) 167, 174
MspR9I CCNGG 2 cut(s) 13, 174
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 183, 229
NciI CCSGG 1 cut(s) 174
NdeII GATC 2 cut(s) 202, 268
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 2 cut(s) 219, 263
NlaIV GGNNCC 2 cut(s) 171, 178
NspI RCATGY 1 cut(s) 219
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 171, 178
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 268
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 2 cut(s) 202, 268
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 13, 174
SetI ASST 5 cut(s) 34, 87, 127, 166, 255
Sse9I AATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 11, 172
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 2 cut(s) 34, 87
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 263
TseI GCWGC 1 cut(s) 183
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.