Prupe.5G114400_v2.0.a1

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0003518
Physical Location & Seq
Reverse (-)
11748402 .. 11751026
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G114400.1

Sequence Viewer

Length: 228 bp
ATGGCCGTTCTTCCCAGGCCTTTAGGTGTTGTGGCTGTTGCTGCTCTCGTTTTTGCTATTGCCATCTCTGCTGTTCAGGCAACACCTCTGCCTCCGGGTCCCGCCCCGGCTCCCAGTCACAGCGGCACCGATGGGACAACCCTTGACCAAGGGATTGCGTGCGTGCTAATGTTGCTGGCCCTCGTGCTCACATACCTCATCCACAGTGCCGACGTTCCTGTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

76

Amino Acids

7.5

Weight (kDa)

5.13

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 2 cut(s) 102, 123
AcoI YGGCCR 1 cut(s) 3
AjnI CCWGG 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 189
AoxI GGCC 3 cut(s) 3, 17, 177
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 98, 178
AsuC2I CCSGG 2 cut(s) 96, 107
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 125
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 71, 125
BciT130I CCWGG 1 cut(s) 16
BcnI CCSGG 2 cut(s) 96, 107
BisI GCNGC 2 cut(s) 42, 124
BlsI GCNGC 2 cut(s) 43, 125
Bme1390I CCNGG 3 cut(s) 16, 96, 107
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 178
BmiI GGNNCC 4 cut(s) 99, 100, 111, 127
BmrFI CCNGG 3 cut(s) 16, 96, 107
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpuMI CCSGG 2 cut(s) 96, 107
BsaJI CCNNGG 3 cut(s) 14, 105, 148
Bse1I ACTGG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 14, 105, 148
BseGI GGATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 3 cut(s) 5, 19, 179
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 95, 107
BslFI GGGAC 2 cut(s) 84, 148
BsmFI GGGAC 2 cut(s) 84, 148
BsnI GGCC 3 cut(s) 5, 19, 179
Bsp1286I GDGCHC 1 cut(s) 189
BspACI CCGC 2 cut(s) 102, 123
BspANI GGCC 3 cut(s) 5, 19, 179
BspLI GGNNCC 4 cut(s) 99, 100, 111, 127
BspT107I GGYRCC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 3 cut(s) 14, 105, 148
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 160, 164, 177
BstF5I GGATG 1 cut(s) 198
BstMWI GCNNNNNNNGC 4 cut(s) 41, 68, 77, 172
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 3 cut(s) 14, 94, 105
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 5, 19, 179
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 160, 164, 177
Cfr13I GGNCC 2 cut(s) 98, 178
CviJI RGCY 5 cut(s) 5, 19, 35, 110, 179
CviKI_1 RGCY 5 cut(s) 5, 19, 35, 110, 179
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaiI YATR 1 cut(s) 193
FaqI GGGAC 2 cut(s) 84, 148
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 42, 124
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 42, 124
GluI GCNGC 2 cut(s) 42, 124
HaeIII GGCC 3 cut(s) 5, 19, 179
HapII CCGG 2 cut(s) 95, 107
HpaII CCGG 2 cut(s) 95, 107
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 68, 77, 172
HpySE526I ACGT 1 cut(s) 213
KflI GGGWCCC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 28, 62, 108, 120, 127, 161
Lsp1109I GCAGC 1 cut(s) 28
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 189
MnlI CCTC 4 cut(s) 96, 102, 191, 206
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 2 cut(s) 95, 107
MspR9I CCNGG 3 cut(s) 16, 96, 107
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 41, 68, 77, 172
NciI CCSGG 2 cut(s) 96, 107
NlaIV GGNNCC 4 cut(s) 99, 100, 111, 127
NmuCI GTSAC 1 cut(s) 116
PceI AGGCCT 1 cut(s) 19
PkrI GCNGC 2 cut(s) 43, 125
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 4 cut(s) 99, 100, 111, 127
PspPI GGNCC 2 cut(s) 98, 178
PspPPI RGGWCCY 1 cut(s) 98
SatI GCNGC 2 cut(s) 42, 124
Sau96I GGNCC 2 cut(s) 98, 178
ScrFI CCNGG 3 cut(s) 16, 96, 107
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 28, 88, 198, 216
SinI GGWCC 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 102, 123
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 3 cut(s) 14, 94, 105
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 216
TauI GCSGC 1 cut(s) 126
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.