Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Reverse (-)

8557737 .. 8559488

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGTTGATGGCTAAACCAACCTTCTCCATCGAAGTCTCTCAATACGGAACCACCGATCTACCGGCGACGGAGAAAGCTTCCTCTTCCTCTTCCTCTTTCGAGACAACAAACGAAGAAGGAGTAGAGGAATCTGGTCTAAGTCGGATCTGGTCAGGACAAACGGCGGATTACTCATCGGATAGTTCATCAATCGGAACTCCGGGAGATAGCGAAGAAGACGAAGAAGAAAGCGAAAACGAAAACGATGACGTTTCATCTAAGGAGCTAGGGCTTCGAGGGTTAGCTTCAATGAGCTCTCTTGAAGATTCTCTACCCTCAAAGAGAGGGTTATCGAATCATTACAAAGGGAAATCAAAATCATTTGGGAATTTAGGAGAGATTGGAAGTGTTAAAGAAGTAGCGAAACAAGAGAATCCATTGAATAAAAGAAGAAGATTACAGATCTGTAATAAATTAGCAAGAAAATCGTTTTATTCATGGCAAAACCCTAAATCTATGCCTCTGTTACCAGTAAACGAAGATGAAGACGATGATGATGAAGATGACGATGAAGAAGATCTGAAATCTGGGTTTGATGAGAATAAATCATCGAGTGATGAAGAAGGAGTGAAGAAAGTTGTTGTAAGGAAAGGATCTTTCAAGAACAGAGCTTATAAGTCTAGGAGTTGTTTTGCACTTTCAGATCTGATTGAGGAAGAAGATGATGATGATGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.58

Weight (kDa)

4.37

Isoelectric Point (pI)

74.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	155, 643
AcsI	RAATTY	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	291, 305, 424, 643
AluBI	AGCT	5 cut(s)	80, 268, 287, 297, 653
AluI	AGCT	5 cut(s)	80, 268, 287, 297, 653
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	43, 98
AlwI	GGATC	2 cut(s)	155, 643
ApoI	RAATTY	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	299
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbsI	GAAGAC	2 cut(s)	225, 534
Bbv12I	GWGCWC	1 cut(s)	299
BccI	CCATC	2 cut(s)	4, 38
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	2 cut(s)	450, 484
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	43, 98
BfaI	CTAG	2 cut(s)	269, 663
BglII	AGATCT	3 cut(s)	444, 559, 685
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	204
BpiI	GAAGAC	2 cut(s)	225, 534
BpuMI	CCSGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	714
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	512
Bse8I	GATNNNNATC	1 cut(s)	714
BseJI	GATNNNNATC	1 cut(s)	714
BseNI	ACTGG	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	65, 203
BsmAI	GTCTC	2 cut(s)	43, 98
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	155, 643
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	64
BssMI	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
Bst6I	CTCTTC	2 cut(s)	91, 97
BstDEI	CTNAG	2 cut(s)	140, 261
BstKTI	GATC	7 cut(s)	61, 150, 447, 562, 638, 688, 718
BstMAI	GTCTC	2 cut(s)	43, 98
BstMBI	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
BstSCI	CCNGG	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	225, 534
BstX2I	RGATCY	5 cut(s)	147, 444, 559, 635, 685
BstYI	RGATCY	5 cut(s)	147, 444, 559, 635, 685
Cfr10I	RCCGGY	1 cut(s)	64
CviAII	CATG	1 cut(s)	480
CviJI	RGCY	7 cut(s)	14, 80, 268, 274, 287, 297, 653
CviKI_1	RGCY	7 cut(s)	14, 80, 268, 274, 287, 297, 653
DdeI	CTNAG	2 cut(s)	140, 261
DpnI	GATC	7 cut(s)	60, 149, 446, 561, 637, 687, 717
DpnII	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
Eam1104I	CTCTTC	2 cut(s)	91, 97
EarI	CTCTTC	2 cut(s)	91, 97
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	1 cut(s)	483
FaiI	YATR	3 cut(s)	481, 500, 657
FatI	CATG	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	715
FriOI	GRGCYC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	269, 663
HapII	CCGG	2 cut(s)	65, 203
Hin1II	CATG	1 cut(s)	483
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	4 cut(s)	131, 308, 337, 415
HpaII	CCGG	2 cut(s)	65, 203
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	6 cut(s)	147, 181, 197, 564, 685, 690
Hpy188III	TCNNGA	4 cut(s)	103, 156, 302, 643
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	34, 113, 599
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	677
HpyF3I	CTNAG	2 cut(s)	140, 261
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	78, 120, 136, 141, 216, 525, 555
MaeI	CTAG	2 cut(s)	269, 663
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	7 cut(s)	60, 149, 446, 561, 637, 687, 717
MboI	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
MflI	RGATCY	5 cut(s)	147, 444, 559, 635, 685
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	2 cut(s)	370, 455
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	9 cut(s)	94, 100, 106, 121, 272, 320, 328, 513, 688
MseI	TTAA	1 cut(s)	393
MspI	CCGG	2 cut(s)	65, 203
MspR9I	CCNGG	1 cut(s)	204
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	131, 308, 337, 415
PfoI	TCCNGGA	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	5 cut(s)	147, 444, 559, 635, 685
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	7 cut(s)	58, 147, 444, 559, 635, 685, 715
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	7 cut(s)	26, 82, 255, 270, 289, 299, 655
Sse9I	AATT	2 cut(s)	370, 455
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	269, 663
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	33, 102, 277, 335, 593
TasI	AATT	2 cut(s)	370, 455
TfiI	GAWTC	4 cut(s)	131, 308, 337, 415
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TspDTI	ATGAA	7 cut(s)	177, 246, 468, 540, 555, 567, 615
TspGWI	ACGGA	2 cut(s)	63, 86
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	2 cut(s)	269, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.