Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Forward (+)

7496492 .. 7497724

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1107100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGACGTCCTAGTGGGCCCCACCTTCTCCCTCGACGTATCGTCCTACGGCCCCGCGCCGAAGCAGGACAACCGCAACCGCGGCGGTCTGTACCTGAATCAGGACCGCGGCGCCGCGGTGGCGGAGGAGGCGTCGTCGGACAGCTCGTCGTCTATCGGTGTTCCGGATGACAGCGAGGAAGAGGAAGACTCCAAAGGCGATAACGGCGACGAGGTGCAGAGCAAGTTTAATGGTGGCGGAGGAGGGTTGGGTTCTCTGGGTTCATTTGGATCACTCGAAGATTCTCTCCCAATCAAGAGGGGATTATCCAACTATTTTTCAGGAAAATCAAAGTCATTTGCCAGCCTGTCAGAAGTAAGCAGCACTGTGAGTTCAGTCAAGGAGGTGGAGAAGCAGGACAACCCATTCAACAAGCGGCGGCGGGTTCTGATCGCCTCCAAGTGGTCGAGAAGATCTTCGTCTTCCTCCTCCCTCTACAACTGGCCAAACCCTAAGTCCATGCCGCTGCTAGCCCTAGCCGAAGACGGAGACGAAGATGACGACGAACACGACCGCGATCGAGAAGGCGAGGGAGAGAACGCGTCGTCGGAGCAATCTTCATCGGACGAGAAGGAGGATCAGGAGAGGAGGAGGCCCCCACAGAAACTGCTCGACAGGAGGCTGAAGAGCTTCAAGTCAAAGAGTTGCTATTGCCTCTCAGATCTGCAGGAACACGATGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.37

Weight (kDa)

4.68

Isoelectric Point (pI)

74.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
AccIII	TCCGGA	1 cut(s)	163
AclWI	GGATC	2 cut(s)	277, 624
AcoI	YGGCCR	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	3 cut(s)	6, 111, 131
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	100, 441
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	2 cut(s)	409, 673
AhdI	GACNNNNNGTC	2 cut(s)	40, 145
AluBI	AGCT	2 cut(s)	144, 669
AluI	AGCT	2 cut(s)	144, 669
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	277, 624
AlwNI	CAGNNNCTG	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	4 cut(s)	16, 49, 482, 632
ApaI	GGGCCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	360, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	2 cut(s)	454, 668
AspLEI	GCGC	2 cut(s)	58, 113
AspS9I	GGNCC	5 cut(s)	16, 17, 50, 103, 633
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	3 cut(s)	192, 453, 528
BbvI	GCAGC	2 cut(s)	372, 492
BceAI	ACGGC	2 cut(s)	64, 220
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	3 cut(s)	11, 509, 515
BfmI	CTRYAG	1 cut(s)	704
BfoI	RGCGCY	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	119
BglII	AGATCT	2 cut(s)	452, 700
BisI	GCNGC	8 cut(s)	82, 109, 114, 361, 416, 419, 503, 506
BlsI	GCNGC	8 cut(s)	83, 110, 115, 362, 417, 420, 504, 507
Bme18I	GGWCC	1 cut(s)	103
BmeRI	GACNNNNNGTC	2 cut(s)	40, 145
BmgT120I	GGNCC	5 cut(s)	16, 17, 50, 103, 633
BmiI	GGNNCC	5 cut(s)	18, 19, 52, 112, 635
BmtI	GCTAGC	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	192, 453, 528
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BsaHI	GRCGYC	3 cut(s)	6, 111, 131
BsaJI	CCNNGG	3 cut(s)	79, 106, 114
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 119, 146, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 441
Bse1I	ACTGG	1 cut(s)	485
BseAI	TCCGGA	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	79, 106, 114
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	100, 441
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	5 cut(s)	140, 255, 457, 640, 643
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	372, 492
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
Bsh1285I	CGRYCG	2 cut(s)	553, 559
BshFI	GGCC	4 cut(s)	18, 51, 484, 634
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	2 cut(s)	553, 559
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	100, 441
BsmAI	GTCTC	1 cut(s)	522
BsmBI	CGTCTC	1 cut(s)	522
BsnI	GGCC	4 cut(s)	18, 51, 484, 634
Bsp120I	GGGCCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
BspANI	GGCC	4 cut(s)	18, 51, 484, 634
BspCNI	CTCAG	1 cut(s)	710
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
BspLI	GGNNCC	5 cut(s)	18, 19, 52, 112, 635
BspMAI	CTGCAG	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	277, 624
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	79, 106, 114
BssMI	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
BssNI	GRCGYC	3 cut(s)	6, 111, 131
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	174, 659
BstACI	GRCGYC	3 cut(s)	6, 111, 131
BstC8I	GCNNGC	2 cut(s)	343, 510
BstDEI	CTNAG	2 cut(s)	492, 697
BstDSI	CCRYGG	3 cut(s)	79, 106, 114
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	58, 113
BstKTI	GATC	6 cut(s)	272, 432, 455, 559, 619, 703
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
BstMCI	CGRYCG	2 cut(s)	553, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 119, 128, 204
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
BstV1I	GCAGC	2 cut(s)	372, 492
BstV2I	GAAGAC	3 cut(s)	192, 453, 528
BstX2I	RGATCY	2 cut(s)	452, 700
BstYI	RGATCY	2 cut(s)	452, 700
BsuRI	GGCC	4 cut(s)	18, 51, 484, 634
BtgI	CCRYGG	3 cut(s)	79, 106, 114
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	343, 510
CaiI	CAGNNNCTG	1 cut(s)	646
CfoI	GCGC	2 cut(s)	58, 113
Cfr13I	GGNCC	5 cut(s)	16, 17, 50, 103, 633
Cfr42I	CCGCGG	3 cut(s)	82, 109, 117
CseI	GACGC	2 cut(s)	120, 570
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	492, 697
DinI	GGCGCC	1 cut(s)	112
DpnI	GATC	6 cut(s)	271, 431, 454, 558, 618, 702
DpnII	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
DriI	GACNNNNNGTC	2 cut(s)	40, 145
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	2 cut(s)	174, 659
Eam1105I	GACNNNNNGTC	2 cut(s)	40, 145
EarI	CTCTTC	2 cut(s)	174, 659
EciI	GGCGGA	2 cut(s)	137, 252
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	683
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	2 cut(s)	17, 633
EcoT38I	GRGCYC	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	112
EheI	GGCGCC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	1 cut(s)	502
FaiI	YATR	1 cut(s)	500
FatI	CATG	1 cut(s)	498
FauI	CCCGC	2 cut(s)	61, 414
Fnu4HI	GCNGC	8 cut(s)	82, 109, 114, 361, 416, 419, 503, 506
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	8 cut(s)	82, 109, 114, 361, 416, 419, 503, 506
FspBI	CTAG	3 cut(s)	11, 509, 515
GlaI	GCGC	2 cut(s)	57, 112
GluI	GCNGC	8 cut(s)	82, 109, 114, 361, 416, 419, 503, 506
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	18, 51, 484, 634
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	2 cut(s)	120, 570
HhaI	GCGC	2 cut(s)	58, 113
Hin1I	GRCGYC	3 cut(s)	6, 111, 131
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	2 cut(s)	56, 111
HinP1I	GCGC	2 cut(s)	56, 111
HinfI	GANTC	3 cut(s)	97, 188, 281
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	6 cut(s)	139, 352, 429, 589, 604, 700
Hpy188III	TCNNGA	7 cut(s)	101, 164, 295, 321, 447, 560, 620
Hpy99I	CGWCG	8 cut(s)	38, 136, 139, 151, 212, 545, 586, 589
HpyAV	CCTTC	3 cut(s)	34, 557, 604
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	6, 36
HpyCH4V	TGCA	2 cut(s)	217, 706
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 119, 128, 204
HpyF3I	CTNAG	2 cut(s)	492, 697
HpySE526I	ACGT	2 cut(s)	6, 36
Hsp92I	GRCGYC	3 cut(s)	6, 111, 131
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	2 cut(s)	56, 111
KasI	GGCGCC	1 cut(s)	110
Kpn2I	TCCGGA	1 cut(s)	163
KspI	CCGCGG	3 cut(s)	82, 109, 117
Kzo9I	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	2 cut(s)	372, 492
MaeI	CTAG	3 cut(s)	11, 509, 515
MaeII	ACGT	2 cut(s)	6, 36
MalI	GATC	6 cut(s)	271, 431, 454, 558, 618, 702
MboI	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
MflI	RGATCY	2 cut(s)	452, 700
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	484
MluI	ACGCGT	1 cut(s)	579
MluNI	TGGCCA	1 cut(s)	484
Mly113I	GGCGCC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	3 cut(s)	117, 333, 567
Mox20I	TGGCCA	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	2 cut(s)	454, 668
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	484
MspA1I	CMGCKG	4 cut(s)	81, 108, 116, 505
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	6 cut(s)	56, 81, 108, 116, 555, 581
MwoI	GCNNNNNNNGC	4 cut(s)	81, 119, 128, 204
NarI	GGCGCC	1 cut(s)	111
NdeII	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	5 cut(s)	18, 19, 52, 112, 635
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	3 cut(s)	143, 537, 546
PdmI	GAANNNNTTC	2 cut(s)	454, 668
PfeI	GAWTC	2 cut(s)	97, 281
PkrI	GCNGC	8 cut(s)	83, 110, 115, 362, 417, 420, 504, 507
Ple19I	CGATCG	1 cut(s)	559
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	182
PspN4I	GGNNCC	5 cut(s)	18, 19, 52, 112, 635
PspOMI	GGGCCC	1 cut(s)	16
PspPI	GGNCC	5 cut(s)	16, 17, 50, 103, 633
PstI	CTGCAG	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	452, 700
PvuI	CGATCG	1 cut(s)	559
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacII	CCGCGG	3 cut(s)	82, 109, 117
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	8 cut(s)	82, 109, 114, 361, 416, 419, 503, 506
Sau3AI	GATC	6 cut(s)	269, 429, 452, 556, 616, 700
Sau96I	GGNCC	5 cut(s)	16, 17, 50, 103, 633
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	8 cut(s)	9, 26, 39, 96, 146, 216, 387, 671
SfcI	CTRYAG	1 cut(s)	704
SfoI	GGCGCC	1 cut(s)	112
Sfr303I	CCGCGG	3 cut(s)	82, 109, 117
SgrBI	CCGCGG	3 cut(s)	82, 109, 117
SinI	GGWCC	1 cut(s)	103
SspDI	GGCGCC	1 cut(s)	110
SspMI	CTAG	3 cut(s)	11, 509, 515
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	9, 39
TaqI	TCGA	5 cut(s)	33, 276, 446, 559, 651
TauI	GCSGC	6 cut(s)	84, 111, 116, 418, 421, 505
TfiI	GAWTC	2 cut(s)	97, 281
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	2 cut(s)	360, 505
TspDTI	ATGAA	2 cut(s)	252, 588
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	454, 668
XspI	CTAG	3 cut(s)	11, 509, 515
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.