Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Reverse (-)

62193940 .. 62216782

Gene Structure 22843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG449300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGACCTCCTCAGTGCCTGAAACTAAATCTTGCTATCCTATTGCCCAAGAATTCTCCAACATGTGGAGACCTTGTAAGTCATCTGAATCTGATGAACCTGTTTGCACTGCCTGGTGGAGTTCTAGACCCCCATACTCAATGATGAACAAAATAACACCATCCCTTTTGGATCCCAGCGTAGATAATATTCAGGATAATACAGGTGATGGAGGGGATACTAATGCTGCCACTAGTGAGTCTCAGCTTCATCCAACTCACAATCAGGACAGTCATCTAGTTCACTCTCATTCTCAAGAGAATATTTCTCAACCTGCTGCTGATGATCCAAACAGTGCAAGAGACACACAGTCTGGAGGAGTTGGTTCTGACTCAATGTTGATTGATAATTCTGCAGGAGGAAATCTTGAGATTGTTCTTACTATGGATAATGTTCATATTGGTGATGGGTCTGTGCAAAGTGATCAATGGCGGCAAGTTCCACCTCTTCATCTTCATCTCCATCTCCTCCTCTTCCACCAAACGCACCGTTTTGTCTTCTCCTCCGGCTCCATTTACGACACCGTCGTCTCTCCGATTGATGACTACAACCCCAATTTGGAAGCTCAAACGCAGAAGAAGACGCAGCGGAGAAGGCTAAAAATTCCACCACGCCTCTCTACCAACCGAACCGGAGACCCGAACTTGGCTTTGTTAATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGAGTCGTAGGAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGCGGAGGAGGAGGAGGAGGGCCGCAGAAGGCTCGATCGGAGCAGGCGGAGTCGTTTTCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGATGACAGTGACGAAGAAAATGCATCCAAGCAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGCAGAGGAGGATTGACTTCTCTGGGATCAATGGGTTCTCTGGAAGATTCTCTTCCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGGTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCGTCGTCATCATCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAACCAGAAGAAACACAAGAAGACCCTTCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCGAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCCAGGAGTTGCTATTGTCTCTCAGATCTGCAAGAACATGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

484

Amino Acids

52.23

Weight (kDa)

5.25

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	563
AatII	GACGTC	1 cut(s)	939
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	889
AclWI	GGATC	9 cut(s)	164, 177, 317, 705, 718, 794, 921, 934, 1009
AcoI	YGGCCR	1 cut(s)	973
AcsI	RAATTY	2 cut(s)	50, 639
AcyI	GRCGYC	1 cut(s)	936
AfiI	CCNNNNNNNGG	7 cut(s)	63, 595, 682, 882, 1038, 1182, 1325
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	1150, 1396, 1405
AhdI	GACNNNNNGTC	1 cut(s)	346
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	110, 1409
AleI	CACNNNNGTG	1 cut(s)	1115
AluBI	AGCT	4 cut(s)	244, 602, 794, 1401
AluI	AGCT	4 cut(s)	244, 602, 794, 1401
Alw26I	GTCTC	6 cut(s)	61, 243, 333, 571, 666, 1430
AlwI	GGATC	9 cut(s)	164, 177, 317, 705, 718, 794, 921, 934, 1009
AlwNI	CAGNNNCTG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	889
AoxI	GGCC	3 cut(s)	821, 973, 1327
ApeKI	GCWGC	3 cut(s)	224, 314, 622
ApoI	RAATTY	2 cut(s)	50, 639
Asp700I	GAANNNNTTC	3 cut(s)	1055, 1145, 1400
AspS9I	GGNCC	2 cut(s)	821, 1185
AsuHPI	GGTGA	4 cut(s)	215, 452, 944, 1129
AvaII	GGWCC	1 cut(s)	1185
BamHI	GGATCC	3 cut(s)	169, 710, 926
BanII	GRGCYC	1 cut(s)	889
BbsI	GAAGAC	3 cut(s)	526, 623, 1320
BbvI	GCAGC	3 cut(s)	211, 301, 634
BccI	CCATC	6 cut(s)	166, 200, 437, 507, 887, 1040
BceAI	ACGGC	2 cut(s)	744, 988
BcgI	CGANNNNNNTGC	4 cut(s)	815, 849, 893, 927
BciT130I	CCWGG	2 cut(s)	112, 1411
BciVI	GTATCC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	6 cut(s)	61, 243, 333, 571, 666, 1430
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	4 cut(s)	123, 231, 275, 1256
BfmI	CTRYAG	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	1432
BisI	GCNGC	9 cut(s)	225, 315, 470, 623, 723, 799, 802, 824, 976
BlsI	GCNGC	9 cut(s)	226, 316, 471, 624, 724, 800, 803, 825, 977
Bme1390I	CCNGG	2 cut(s)	112, 1411
Bme18I	GGWCC	1 cut(s)	1185
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	821, 1185
BmiI	GGNNCC	5 cut(s)	171, 547, 712, 888, 928
BmrFI	CCNGG	2 cut(s)	112, 1411
BmsI	GCATC	1 cut(s)	923
BpiI	GAAGAC	3 cut(s)	526, 623, 1320
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	276, 425
BsaHI	GRCGYC	1 cut(s)	936
BsaI	GGTCTC	2 cut(s)	61, 666
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	3 cut(s)	668, 889, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 595, 682, 882, 1038, 1182, 1325
BseAI	TCCGGA	1 cut(s)	889
BseBI	CCWGG	2 cut(s)	112, 1411
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	4 cut(s)	158, 247, 898, 914
BseLI	CCNNNNNNNGG	7 cut(s)	63, 595, 682, 882, 1038, 1182, 1325
BseMII	CTCAG	4 cut(s)	24, 254, 1074, 1443
BseX3I	CGGCCG	1 cut(s)	973
BseXI	GCAGC	3 cut(s)	211, 301, 634
BseYI	CCCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	839, 976
BshFI	GGCC	3 cut(s)	823, 975, 1329
BsiEI	CGRYCG	2 cut(s)	839, 976
BsiSI	CCGG	4 cut(s)	543, 669, 890, 930
BslI	CCNNNNNNNGG	7 cut(s)	63, 595, 682, 882, 1038, 1182, 1325
BsmAI	GTCTC	6 cut(s)	61, 243, 333, 571, 666, 1430
BsmBI	CGTCTC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	823, 975, 1329
Bso31I	GGTCTC	2 cut(s)	61, 666
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp13I	TCCGGA	1 cut(s)	889
BspANI	GGCC	3 cut(s)	823, 975, 1329
BspCNI	CTCAG	4 cut(s)	23, 253, 1073, 1442
BspEI	TCCGGA	1 cut(s)	889
BspLI	GGNNCC	5 cut(s)	171, 547, 712, 888, 928
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	9 cut(s)	164, 177, 317, 705, 718, 794, 921, 934, 1009
BspQI	GCTCTTC	1 cut(s)	1391
BspTNI	GGTCTC	2 cut(s)	61, 666
BssECI	CCNNGG	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	936
Bst2UI	CCWGG	2 cut(s)	112, 1411
Bst4CI	ACNGT	7 cut(s)	269, 332, 348, 527, 562, 899, 1117
Bst6I	CTCTTC	5 cut(s)	489, 515, 1032, 1127, 1391
BstACI	GRCGYC	1 cut(s)	936
BstC8I	GCNNGC	2 cut(s)	796, 846
BstDEI	CTNAG	4 cut(s)	10, 240, 1060, 1429
BstENI	CCTNNNNNAGG	1 cut(s)	1323
BstF5I	GGATG	4 cut(s)	158, 247, 898, 914
BstMAI	GTCTC	6 cut(s)	61, 243, 333, 571, 666, 1430
BstMCI	CGRYCG	2 cut(s)	839, 976
BstMWI	GCNNNNNNNGC	2 cut(s)	631, 728
BstNI	CCWGG	2 cut(s)	112, 1411
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	110, 1409
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	211, 301, 634
BstV2I	GAAGAC	3 cut(s)	526, 623, 1320
BstX2I	RGATCY	4 cut(s)	169, 710, 926, 1432
BstYI	RGATCY	4 cut(s)	169, 710, 926, 1432
BstZI	CGGCCG	1 cut(s)	973
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	823, 975, 1329
BtsCI	GGATG	4 cut(s)	158, 247, 898, 914
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	5 cut(s)	18, 105, 337, 904, 939
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	2 cut(s)	796, 846
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	821, 1185
CseI	GACGC	1 cut(s)	628
CviAII	CATG	4 cut(s)	61, 1246, 1360, 1445
DdeI	CTNAG	4 cut(s)	10, 240, 1060, 1429
DrdI	GACNNNNNNGTC	1 cut(s)	563
DriI	GACNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	973
EagI	CGGCCG	1 cut(s)	973
Eam1104I	CTCTTC	5 cut(s)	489, 515, 1032, 1127, 1391
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	5 cut(s)	489, 515, 1032, 1127, 1391
EciI	GGCGGA	2 cut(s)	819, 863
EclXI	CGGCCG	1 cut(s)	973
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	2 cut(s)	61, 666
Eco47I	GGWCC	1 cut(s)	1185
Eco52I	CGGCCG	1 cut(s)	973
EcoNI	CCTNNNNNAGG	1 cut(s)	1323
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	110, 1409
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	889
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	4 cut(s)	64, 1249, 1363, 1448
FaiI	YATR	7 cut(s)	62, 133, 422, 435, 1247, 1361, 1446
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FatI	CATG	4 cut(s)	60, 1245, 1359, 1444
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	9 cut(s)	225, 315, 470, 623, 723, 799, 802, 824, 976
FokI	GGATG	4 cut(s)	145, 234, 901, 905
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	9 cut(s)	225, 315, 470, 623, 723, 799, 802, 824, 976
FspBI	CTAG	4 cut(s)	123, 231, 275, 1256
GluI	GCNGC	9 cut(s)	225, 315, 470, 623, 723, 799, 802, 824, 976
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	823, 975, 1329
HapII	CCGG	4 cut(s)	543, 669, 890, 930
HgaI	GACGC	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	4 cut(s)	64, 1249, 1363, 1448
HinfI	GANTC	6 cut(s)	86, 236, 368, 759, 851, 1022
HpaII	CCGG	4 cut(s)	543, 669, 890, 930
HphI	GGTGA	4 cut(s)	215, 452, 944, 1129
Hpy166II	GTNNAC	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	7 cut(s)	566, 730, 1117, 1201, 1204, 1207, 1210
HpyAV	CCTTC	5 cut(s)	624, 823, 1114, 1155, 1329
HpyCH4III	ACNGT	7 cut(s)	269, 332, 348, 527, 562, 899, 1117
HpyCH4IV	ACGT	2 cut(s)	699, 936
HpyCH4V	TGCA	6 cut(s)	105, 335, 392, 454, 914, 1438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	631, 728
HpyF3I	CTNAG	4 cut(s)	10, 240, 1060, 1429
HpySE526I	ACGT	2 cut(s)	699, 936
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	4 cut(s)	64, 1249, 1363, 1448
Kpn2I	TCCGGA	1 cut(s)	889
Ksp22I	TGATCA	1 cut(s)	460
LguI	GCTCTTC	1 cut(s)	1391
LmnI	GCTCC	4 cut(s)	551, 791, 841, 892
Lsp1109I	GCAGC	3 cut(s)	211, 301, 634
LweI	GCATC	1 cut(s)	923
MaeI	CTAG	4 cut(s)	123, 231, 275, 1256
MaeII	ACGT	2 cut(s)	699, 936
MaeIII	GTNAC	4 cut(s)	899, 932, 937, 1099
MflI	RGATCY	4 cut(s)	169, 710, 926, 1432
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	5 cut(s)	50, 385, 592, 639, 1376
MlyI	GAGTC	4 cut(s)	245, 362, 768, 860
MmeI	TCCRAC	2 cut(s)	81, 275
Mph1103I	ATGCAT	1 cut(s)	916
MroI	TCCGGA	1 cut(s)	889
MroXI	GAANNNNTTC	3 cut(s)	1055, 1145, 1400
MseI	TTAA	3 cut(s)	692, 969, 1265
MslI	CAYNNNNRTG	2 cut(s)	438, 1115
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	4 cut(s)	543, 669, 890, 930
MspR9I	CCNGG	2 cut(s)	112, 1411
MvaI	CCWGG	2 cut(s)	112, 1411
MwoI	GCNNNNNNNGC	2 cut(s)	631, 728
NlaIII	CATG	4 cut(s)	64, 1249, 1363, 1448
NlaIV	GGNNCC	5 cut(s)	171, 547, 712, 888, 928
NmeAIII	GCCGAG	1 cut(s)	698
NmuCI	GTSAC	4 cut(s)	899, 932, 937, 1099
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	1115
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	1391
PcsI	WCGNNNNNNNCGW	3 cut(s)	561, 1202, 1205
PdmI	GAANNNNTTC	3 cut(s)	1055, 1145, 1400
PfeI	GAWTC	2 cut(s)	86, 1022
PflFI	GACNNNGTC	1 cut(s)	560
PflMI	CCANNNNNTGG	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	1409
PkrI	GCNGC	9 cut(s)	226, 316, 471, 624, 724, 800, 803, 825, 977
Ple19I	CGATCG	1 cut(s)	839
PleI	GAGTC	4 cut(s)	244, 362, 767, 859
PpsI	GAGTC	4 cut(s)	244, 362, 767, 859
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	110, 1409
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	110, 1409
PspN4I	GGNNCC	5 cut(s)	171, 547, 712, 888, 928
PspPI	GGNCC	2 cut(s)	821, 1185
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	4 cut(s)	169, 710, 926, 1432
PsyI	GACNNNGTC	1 cut(s)	560
PvuI	CGATCG	1 cut(s)	839
RseI	CAYNNNNRTG	2 cut(s)	438, 1115
SapI	GCTCTTC	1 cut(s)	1391
SaqAI	TTAA	3 cut(s)	692, 969, 1265
SatI	GCNGC	9 cut(s)	225, 315, 470, 623, 723, 799, 802, 824, 976
Sau96I	GGNCC	2 cut(s)	821, 1185
SchI	GAGTC	4 cut(s)	245, 362, 768, 860
ScrFI	CCNGG	2 cut(s)	112, 1411
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	1 cut(s)	923
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	1185
SmiMI	CAYNNNNRTG	2 cut(s)	438, 1115
SmlI	CTYRAG	2 cut(s)	291, 404
SmoI	CTYRAG	2 cut(s)	291, 404
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	5 cut(s)	50, 385, 592, 639, 1376
SspI	AATATT	2 cut(s)	187, 301
SspMI	CTAG	4 cut(s)	123, 231, 275, 1256
StyD4I	CCNGG	2 cut(s)	110, 1409
TaaI	ACNGT	7 cut(s)	269, 332, 348, 527, 562, 899, 1117
TaiI	ACGT	2 cut(s)	702, 939
TaqI	TCGA	4 cut(s)	835, 860, 1049, 1070
TasI	AATT	5 cut(s)	50, 385, 592, 639, 1376
TauI	GCSGC	6 cut(s)	472, 725, 801, 804, 826, 978
TfiI	GAWTC	2 cut(s)	86, 1022
Tru1I	TTAA	3 cut(s)	692, 969, 1265
Tru9I	TTAA	3 cut(s)	692, 969, 1265
TscAI	CASTG	5 cut(s)	18, 112, 337, 904, 946
TseFI	GTSAC	4 cut(s)	899, 932, 937, 1099
TseI	GCWGC	3 cut(s)	224, 314, 622
Tsp45I	GTSAC	4 cut(s)	899, 932, 937, 1099
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	5 cut(s)	18, 112, 337, 904, 946
Tth111I	GACNNNGTC	1 cut(s)	560
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	1185
XagI	CCTNNNNNAGG	1 cut(s)	1323
XapI	RAATTY	2 cut(s)	50, 639
XbaI	TCTAGA	1 cut(s)	122
XceI	RCATGY	1 cut(s)	64
XmnI	GAANNNNTTC	3 cut(s)	1055, 1145, 1400
XspI	CTAG	4 cut(s)	123, 231, 275, 1256
ZraI	GACGTC	1 cut(s)	937
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.