Rh6BG452200

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010172
Physical Location & Seq
Forward (+)
66626397 .. 66628392
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG452200.1

Sequence Viewer

Length: 744 bp
ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTAGGAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGAGGAGGAGGGCCGCAGAAGGCTCGATCGGAGCAGGCGGAGTCGTTTTCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGATGACAGTGACGAAGAAAATGCATCCAAGCAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGCAGAGGAGGATTGACTTCTCTGGGATCAATGGGTTCTCTAGAAGATTCTCTTTCCATCAAGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGGTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCGTCGTCGTCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGTCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCAAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCCAGGAGTTGCTATTGTCTCTCAGATCTGCAAGAACATGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

26.24

Weight (kDa)

5.29

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 7 cut(s) 29, 105, 108, 122, 146, 274, 405
AclWI GGATC 6 cut(s) 12, 25, 101, 219, 232, 307
AcoI YGGCCR 1 cut(s) 271
AcyI GRCGYC 2 cut(s) 66, 234
AfiI CCNNNNNNNGG 4 cut(s) 180, 336, 480, 614
AgsI TTSAA 3 cut(s) 448, 685, 694
AjnI CCWGG 1 cut(s) 698
AleI CACNNNNGTG 1 cut(s) 413
AluBI AGCT 2 cut(s) 101, 690
AluI AGCT 2 cut(s) 101, 690
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 6 cut(s) 12, 25, 101, 219, 232, 307
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 119, 271
Asp700I GAANNNNTTC 3 cut(s) 353, 443, 689
AspS9I GGNCC 2 cut(s) 119, 483
AsuHPI GGTGA 2 cut(s) 242, 427
AvaII GGWCC 1 cut(s) 483
BamHI GGATCC 2 cut(s) 17, 224
BanII GRGCYC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 609
BccI CCATC 3 cut(s) 185, 338, 616
BceAI ACGGC 3 cut(s) 51, 79, 286
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 191, 225
BciT130I CCWGG 1 cut(s) 700
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 2 cut(s) 314, 551
BglII AGATCT 1 cut(s) 721
BisI GCNGC 4 cut(s) 30, 106, 122, 274
BlsI GCNGC 4 cut(s) 31, 107, 123, 275
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 119, 483
BmiI GGNNCC 3 cut(s) 19, 186, 226
BmrFI CCNGG 1 cut(s) 700
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 609
BsaHI GRCGYC 2 cut(s) 66, 234
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 2 cut(s) 187, 227
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 336, 480, 614
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 700
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 196, 212
BseLI CCNNNNNNNGG 4 cut(s) 180, 336, 480, 614
BseMII CTCAG 2 cut(s) 372, 732
BseRI GAGGAG 6 cut(s) 90, 126, 129, 263, 294, 469
BseX3I CGGCCG 1 cut(s) 271
Bsh1285I CGRYCG 2 cut(s) 137, 274
BshFI GGCC 2 cut(s) 121, 273
BsiEI CGRYCG 2 cut(s) 137, 274
BsiSI CCGG 2 cut(s) 188, 228
BslI CCNNNNNNNGG 4 cut(s) 180, 336, 480, 614
BsmAI GTCTC 1 cut(s) 719
BsnI GGCC 2 cut(s) 121, 273
Bsp1286I GDGCHC 1 cut(s) 187
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
BspACI CCGC 7 cut(s) 29, 105, 108, 122, 146, 274, 405
BspANI GGCC 2 cut(s) 121, 273
BspCNI CTCAG 2 cut(s) 371, 731
BspEI TCCGGA 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 19, 186, 226
BspPI GGATC 6 cut(s) 12, 25, 101, 219, 232, 307
BspQI GCTCTTC 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
BssNI GRCGYC 2 cut(s) 66, 234
Bst2UI CCWGG 1 cut(s) 700
Bst4CI ACNGT 2 cut(s) 197, 415
Bst6I CTCTTC 2 cut(s) 425, 680
BstACI GRCGYC 2 cut(s) 66, 234
BstC8I GCNNGC 2 cut(s) 103, 144
BstDEI CTNAG 2 cut(s) 358, 718
BstF5I GGATG 2 cut(s) 196, 212
BstKTI GATC 7 cut(s) 20, 96, 137, 227, 302, 471, 724
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
BstMCI CGRYCG 2 cut(s) 137, 274
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 698
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 3 cut(s) 17, 224, 721
BstYI RGATCY 3 cut(s) 17, 224, 721
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 121, 273
BtsCI GGATG 2 cut(s) 196, 212
BtsIMutI CAGTG 2 cut(s) 202, 237
Cac8I GCNNGC 2 cut(s) 103, 144
Cfr13I GGNCC 2 cut(s) 119, 483
CseI GACGC 1 cut(s) 55
CviAII CATG 3 cut(s) 541, 649, 734
CviJI RGCY 8 cut(s) 38, 101, 121, 131, 185, 273, 554, 690
CviKI_1 RGCY 8 cut(s) 38, 101, 121, 131, 185, 273, 554, 690
DdeI CTNAG 2 cut(s) 358, 718
DpnI GATC 7 cut(s) 19, 95, 136, 226, 301, 470, 723
DpnII GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 425, 680
EarI CTCTTC 2 cut(s) 425, 680
EciI GGCGGA 2 cut(s) 123, 161
EclXI CGGCCG 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 483
Eco52I CGGCCG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 187
FaeI CATG 3 cut(s) 544, 652, 737
FaiI YATR 3 cut(s) 542, 650, 735
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FatI CATG 3 cut(s) 540, 648, 733
Fnu4HI GCNGC 4 cut(s) 30, 106, 122, 274
FokI GGATG 2 cut(s) 199, 203
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 30, 106, 122, 274
FspBI CTAG 2 cut(s) 314, 551
GluI GCNGC 4 cut(s) 30, 106, 122, 274
HaeIII GGCC 2 cut(s) 121, 273
HapII CCGG 2 cut(s) 188, 228
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 2 cut(s) 66, 234
Hin1II CATG 3 cut(s) 544, 652, 737
HinfI GANTC 2 cut(s) 149, 320
HpaII CCGG 2 cut(s) 188, 228
HphI GGTGA 2 cut(s) 242, 427
Hpy188I TCNGA 7 cut(s) 98, 139, 258, 391, 631, 656, 721
Hpy188III TCNNGA 5 cut(s) 188, 314, 334, 360, 486
Hpy99I CGWCG 8 cut(s) 37, 71, 415, 499, 502, 505, 508, 511
HpyAV CCTTC 3 cut(s) 121, 412, 453
HpyCH4III ACNGT 2 cut(s) 197, 415
HpyCH4IV ACGT 2 cut(s) 6, 234
HpyCH4V TGCA 2 cut(s) 212, 727
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 358, 718
HpySE526I ACGT 2 cut(s) 6, 234
Hsp92I GRCGYC 2 cut(s) 66, 234
Hsp92II CATG 3 cut(s) 544, 652, 737
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
LguI GCTCTTC 1 cut(s) 680
LmnI GCTCC 3 cut(s) 98, 139, 190
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 314, 551
MaeII ACGT 2 cut(s) 6, 234
MaeIII GTNAC 4 cut(s) 197, 230, 235, 397
MalI GATC 7 cut(s) 19, 95, 136, 226, 301, 470, 723
MboI GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
MflI RGATCY 3 cut(s) 17, 224, 721
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 1 cut(s) 665
MlyI GAGTC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 214
MroI TCCGGA 1 cut(s) 187
MroXI GAANNNNTTC 3 cut(s) 353, 443, 689
MseI TTAA 2 cut(s) 267, 560
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 2 cut(s) 188, 228
MspR9I CCNGG 1 cut(s) 700
MvaI CCWGG 1 cut(s) 700
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
NlaIII CATG 3 cut(s) 544, 652, 737
NlaIV GGNNCC 3 cut(s) 19, 186, 226
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 4 cut(s) 197, 230, 235, 397
NsiI ATGCAT 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 680
PcsI WCGNNNNNNNCGW 3 cut(s) 500, 503, 506
PdmI GAANNNNTTC 3 cut(s) 353, 443, 689
PfeI GAWTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 698
PkrI GCNGC 4 cut(s) 31, 107, 123, 275
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 698
PspGI CCWGG 1 cut(s) 698
PspN4I GGNNCC 3 cut(s) 19, 186, 226
PspPI GGNCC 2 cut(s) 119, 483
PsuI RGATCY 3 cut(s) 17, 224, 721
PvuI CGATCG 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 680
SaqAI TTAA 2 cut(s) 267, 560
SatI GCNGC 4 cut(s) 30, 106, 122, 274
Sau3AI GATC 7 cut(s) 17, 93, 134, 224, 299, 468, 721
Sau96I GGNCC 2 cut(s) 119, 483
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 1 cut(s) 187
SetI ASST 8 cut(s) 9, 26, 103, 237, 255, 426, 619, 692
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 413
Sse9I AATT 1 cut(s) 665
SsiI CCGC 7 cut(s) 29, 105, 108, 122, 146, 274, 405
SspMI CTAG 2 cut(s) 314, 551
StyD4I CCNGG 1 cut(s) 698
TaaI ACNGT 2 cut(s) 197, 415
TaiI ACGT 2 cut(s) 9, 237
TaqI TCGA 4 cut(s) 133, 158, 347, 368
TasI AATT 1 cut(s) 665
TauI GCSGC 4 cut(s) 32, 108, 124, 276
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 267, 560
Tru9I TTAA 2 cut(s) 267, 560
TscAI CASTG 2 cut(s) 202, 244
TseFI GTSAC 4 cut(s) 197, 230, 235, 397
Tsp45I GTSAC 4 cut(s) 197, 230, 235, 397
TspDTI ATGAA 3 cut(s) 579, 585, 615
TspRI CASTG 2 cut(s) 202, 244
VpaK11BI GGWCC 1 cut(s) 483
XbaI TCTAGA 1 cut(s) 313
XmnI GAANNNNTTC 3 cut(s) 353, 443, 689
XspI CTAG 2 cut(s) 314, 551
ZraI GACGTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.