Prupe.1G459400_v2.0.a1

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010172
Physical Location & Seq
Forward (+)
38467321 .. 38468814
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G459400.1

Sequence Viewer

Length: 687 bp
ATGGATGTCTTGGTGGGCCCCGCCTTCTCCATCGGGGACGGCCGCGGCCGTCTCTTCGTGAAGCAGAACGTGGAGGCGCTGCCGAGGTCCGAAGAGGCTTCCTCGGACAGTTCGTCCTCGATCGGGGCTCCTGACGACAGCGAAGAATACGATTCCAAAGGAGATGATGGCGACGGCGACGGCGAGGAGGTGCAGAGCAAGTTTAACGGCGGCGGAGGCGGAGGAGGGTTGGGTTCTCTGGGTTCGTTTGGTTCGTTAGAAGAGTCTCTTCCAATCAAGAGGGGATTATCCAATTACTTCTCAGGAAAATCAAAGTCATTTGCAAGTCTGTCAGAAGTGAGCTCCTCCGTGAGCTCAGTGAAGGAGGTGGAGAAGAGAGACAACCCATTCAACAAGAGGAGGAGGGTTTTGATTGCCTCCAAATGGTCAAGAAAGTCTTCATCTTTCTACAACTGGCCCAACCCAAAGTCCATGCCTTTGCTAGCCCTAGCTGAACATGAGGAAGATGAAGAAGACGATGAACAGCAGCAGGAACAACAAGAACAGCAAGACCCATCATCAGACCAATCTTCATCAGATGACAAGGAACAGCAAGACAGAAGAGCCCCAAAGAATTTGCTCGACAGAAGGCTCAAGAGTTTCAAGTCAAGAAGTTGCTATTGCCTCTCAGATCTGCAAGACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.03

Weight (kDa)

4.73

Isoelectric Point (pI)

83.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 21, 43, 45, 210, 213, 219
AcoI YGGCCR 2 cut(s) 40, 46
AcsI RAATTY 1 cut(s) 613
AfiI CCNNNNNNNGG 2 cut(s) 123, 423
AgsI TTSAA 2 cut(s) 391, 643
AhdI GACNNNNNGTC 1 cut(s) 112
AluBI AGCT 3 cut(s) 342, 354, 491
AluI AGCT 3 cut(s) 342, 354, 491
Alw21I GWGCWC 2 cut(s) 344, 356
Alw26I GTCTC 3 cut(s) 56, 270, 372
AoxI GGCC 4 cut(s) 16, 40, 46, 455
ApaI GGGCCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 79, 526
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 4 cut(s) 16, 17, 87, 456
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 20
BanII GRGCYC 5 cut(s) 20, 130, 344, 356, 607
BbsI GAAGAC 2 cut(s) 429, 519
Bbv12I GWGCWC 2 cut(s) 344, 356
BbvI GCAGC 2 cut(s) 66, 538
BccI CCATC 3 cut(s) 38, 161, 562
BceAI ACGGC 5 cut(s) 33, 55, 190, 196, 223
BcoDI GTCTC 3 cut(s) 56, 270, 372
BfaI CTAG 2 cut(s) 482, 488
BfoI RGCGCY 1 cut(s) 80
BglII AGATCT 1 cut(s) 670
BisI GCNGC 5 cut(s) 43, 46, 80, 211, 527
BlsI GCNGC 5 cut(s) 44, 47, 81, 212, 528
Bme18I GGWCC 1 cut(s) 87
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 16, 17, 87, 456
BmiI GGNNCC 3 cut(s) 18, 19, 129
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 2 cut(s) 429, 519
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 43, 83, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 423
Bse1I ACTGG 1 cut(s) 458
BseDI CCNNGG 3 cut(s) 43, 83, 102
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 123, 423
BseMII CTCAG 3 cut(s) 315, 369, 681
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 5 cut(s) 200, 237, 334, 412, 415
BseSI GKGCMC 1 cut(s) 20
BseX3I CGGCCG 2 cut(s) 40, 46
BseXI GCAGC 2 cut(s) 66, 538
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 3 cut(s) 43, 49, 123
BshFI GGCC 4 cut(s) 18, 42, 48, 457
BsiEI CGRYCG 3 cut(s) 43, 49, 123
BsiHKAI GWGCWC 2 cut(s) 344, 356
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 123, 423
BsmAI GTCTC 3 cut(s) 56, 270, 372
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 4 cut(s) 18, 42, 48, 457
Bsp120I GGGCCC 1 cut(s) 16
Bsp1286I GDGCHC 5 cut(s) 20, 130, 344, 356, 607
Bsp143I GATC 2 cut(s) 120, 670
BspACI CCGC 6 cut(s) 21, 43, 45, 210, 213, 219
BspANI GGCC 4 cut(s) 18, 42, 48, 457
BspCNI CTCAG 3 cut(s) 314, 368, 680
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 18, 19, 129
BspOI GCTAGC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 595
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 43, 83, 102
BssMI GATC 2 cut(s) 120, 670
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 6 cut(s) 59, 87, 255, 273, 368, 595
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 301, 355, 667
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 123, 673
BstMAI GTCTC 3 cut(s) 56, 270, 372
BstMBI GATC 2 cut(s) 120, 670
BstMCI CGRYCG 3 cut(s) 43, 49, 123
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 66, 538
BstV2I GAAGAC 2 cut(s) 429, 519
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BstZI CGGCCG 2 cut(s) 40, 46
BsuRI GGCC 4 cut(s) 18, 42, 48, 457
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 4 cut(s) 16, 17, 87, 456
Cfr42I CCGCGG 1 cut(s) 46
CviAII CATG 2 cut(s) 472, 497
DdeI CTNAG 3 cut(s) 301, 355, 667
DpnI GATC 2 cut(s) 122, 672
DpnII GATC 2 cut(s) 120, 670
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 40, 46
EagI CGGCCG 2 cut(s) 40, 46
Eam1104I CTCTTC 6 cut(s) 59, 87, 255, 273, 368, 595
Eam1105I GACNNNNNGTC 1 cut(s) 112
EarI CTCTTC 6 cut(s) 59, 87, 255, 273, 368, 595
EciI GGCGGA 2 cut(s) 228, 234
Ecl136II GAGCTC 2 cut(s) 342, 354
EclXI CGGCCG 2 cut(s) 40, 46
Eco24I GRGCYC 5 cut(s) 20, 130, 344, 356, 607
Eco47I GGWCC 1 cut(s) 87
Eco52I CGGCCG 2 cut(s) 40, 46
Eco53kI GAGCTC 2 cut(s) 342, 354
EcoICRI GAGCTC 2 cut(s) 342, 354
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 5 cut(s) 20, 130, 344, 356, 607
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 475, 500
FaiI YATR 2 cut(s) 473, 498
FalI AAGNNNNNCTT 4 cut(s) 252, 284, 421, 453
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 471, 496
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 5 cut(s) 43, 46, 80, 211, 527
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 5 cut(s) 20, 130, 344, 356, 607
Fsp4HI GCNGC 5 cut(s) 43, 46, 80, 211, 527
FspBI CTAG 2 cut(s) 482, 488
GlaI GCGC 1 cut(s) 78
GluI GCNGC 5 cut(s) 43, 46, 80, 211, 527
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 4 cut(s) 18, 42, 48, 457
HhaI GCGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 475, 500
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 2 cut(s) 152, 263
Hpy188I TCNGA 6 cut(s) 91, 106, 334, 562, 577, 670
Hpy188III TCNNGA 7 cut(s) 58, 131, 277, 303, 429, 634, 648
Hpy99I CGWCG 2 cut(s) 176, 182
HpyAV CCTTC 3 cut(s) 34, 355, 621
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 193, 323, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 3 cut(s) 301, 355, 667
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 475, 500
HspAI GCGC 1 cut(s) 77
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 120, 670
LguI GCTCTTC 1 cut(s) 595
LmnI GCTCC 2 cut(s) 133, 347
LpnPI CCDG 5 cut(s) 144, 224, 288, 439, 515
Lsp1109I GCAGC 2 cut(s) 66, 538
MaeI CTAG 2 cut(s) 482, 488
MaeII ACGT 1 cut(s) 69
MalI GATC 2 cut(s) 122, 672
MboI GATC 2 cut(s) 120, 670
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 5 cut(s) 20, 130, 344, 356, 607
MluCI AATT 2 cut(s) 292, 613
MlyI GAGTC 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 2 cut(s) 204, 685
MspA1I CMGCKG 1 cut(s) 45
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 2 cut(s) 120, 670
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 2 cut(s) 475, 500
NlaIV GGNNCC 3 cut(s) 18, 19, 129
NmeAIII GCCGAG 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 3 cut(s) 110, 180, 251
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 5 cut(s) 44, 47, 81, 212, 528
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp124BI GAGCTC 2 cut(s) 344, 356
PspN4I GGNNCC 3 cut(s) 18, 19, 129
PspOMI GGGCCC 1 cut(s) 16
PspPI GGNCC 4 cut(s) 16, 17, 87, 456
PsuI RGATCY 1 cut(s) 670
PvuI CGATCG 1 cut(s) 123
SacI GAGCTC 2 cut(s) 344, 356
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 204, 685
SatI GCNGC 5 cut(s) 43, 46, 80, 211, 527
Sau3AI GATC 2 cut(s) 120, 670
Sau96I GGNCC 4 cut(s) 16, 17, 87, 456
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 5 cut(s) 20, 130, 344, 356, 607
SetI ASST 7 cut(s) 72, 89, 192, 344, 356, 369, 493
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 2 cut(s) 292, 613
SsiI CCGC 6 cut(s) 21, 43, 45, 210, 213, 219
SspMI CTAG 2 cut(s) 482, 488
SstI GAGCTC 2 cut(s) 344, 356
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 119, 621
TasI AATT 2 cut(s) 292, 613
TauI GCSGC 3 cut(s) 45, 48, 213
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 204, 685
Tru9I TTAA 2 cut(s) 204, 685
TscAI CASTG 1 cut(s) 363
TseI GCWGC 2 cut(s) 79, 526
TspDTI ATGAA 4 cut(s) 429, 522, 534, 561
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 2 cut(s) 482, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.