Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010172

Physical Location & Seq

Genomic Coordinates Reverse (-)

63122239 .. 63123104

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGACGTTTTGGTGGGATCCACCTCGGCGGCGACGGCTTCCTGTCTGTTTCTCAACCAAAACGGCGTCGTAGGAGGGGGAAAATCGGGGATCGGAGCTTGCGGCGGAGGGAAGGCTCGATCGGAGCAGGCGGACTCGTTTTCGAGCAGTTCTTCGTCCTCCATCGGGGCTCCGGACGACAGTGACGAAGAAAATGCATCCAAGGAAGGATCCGGTGACGTCACTGACAGCGAGGAGGTTCAGAGCAAGTTTAACGGCCGAGGAGGATTGACTTCTCTGGGATCAATGGGCTTCTCTAGAAGATTCTCTTCCCATCAAGTAAGATCTAATTATTTATTGCGACCATGCAGGAGGGGATTATCGAACTACTTCTCAGGAAAATCGAAATCGTTTGCGAGTTTATCAGATGTTGTGACCACCGCCACGACGGTGAAGGAGGTGGAGAAGAGGGAGAACCCATTCAACAAGAGGAGAAGGGTTTTGATCGCCTCAAAGTGGTCCAGAAAGTCGTCGTCGTCGTCGTCTTTTTACAACCACCCAAACCCAAAATCCATGCCATTACTAGCCTCCTTAAATGAAGATGAAGAAGAACAAGAACCAGAAGAAACACAAGAAGACCCATCATCAGGCCAATCTTCATCAGATGAGAAAGAACCACACATGGTCAGAACCCCAAAATTGCTTGACAGGGGATTGAAGAGCTTCAAGTCTAGGAGTTGCTATTGCCTCTCAGATCTGCAAGAACATGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.11

Weight (kDa)

6.15

Isoelectric Point (pI)

70.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24890
fragaria_vesca	FvH4_2g36700 FvH4_2g36700
malus_domestica	MD08G1127700.v1.1 MD15G1107100.v1.1
prunus_persica	Prupe.1G291400_v2.0.a1 Prupe.1G459400_v2.0.a1
pyrus_communis	pycom08g10670 pycom15g09790
rosa_chinensis	RchiOBHm_Chr6g0305061
rosa_laevigata	RLG00000010922
rosa_multiflora	Rmu_co8279775.1_g000001 Rmu_sc0000061.1_g000030 Rmu_sc0023906.1_g000001
rosa_roxburghii	Rroxscaffold_7G00163190
rosa_rugosa	Rorug06G0337100
rosa_samantha	Rh6AG448700 Rh6BG452200 Rh6CG462400 Rh6DG449300
rosa_wichuraiana	Rw6G039090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	5 cut(s)	29, 102, 105, 131, 420
AclWI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	2 cut(s)	66, 219
AfiI	CCNNNNNNNGG	3 cut(s)	165, 495, 626
AgsI	TTSAA	3 cut(s)	463, 697, 706
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	98, 702
AluI	AGCT	2 cut(s)	98, 702
AlwI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	2 cut(s)	256, 628
Asp700I	GAANNNNTTC	3 cut(s)	368, 458, 701
AspS9I	GGNCC	1 cut(s)	498
AsuHPI	GGTGA	2 cut(s)	227, 442
AvaII	GGWCC	1 cut(s)	498
BamHI	GGATCC	2 cut(s)	17, 209
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	621
BccI	CCATC	3 cut(s)	170, 321, 628
BceAI	ACGGC	3 cut(s)	51, 79, 271
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BfaI	CTAG	3 cut(s)	297, 563, 711
BglII	AGATCT	2 cut(s)	323, 733
BisI	GCNGC	2 cut(s)	30, 103
BlsI	GCNGC	2 cut(s)	31, 104
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	3 cut(s)	19, 171, 211
BmsI	GCATC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	66, 219
BsaJI	CCNNGG	3 cut(s)	24, 201, 259
BsaWI	WCCGGW	2 cut(s)	172, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 495, 626
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	24, 201, 259
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	165, 495, 626
BseMII	CTCAG	2 cut(s)	387, 744
BseRI	GAGGAG	3 cut(s)	248, 276, 484
BseX3I	CGGCCG	1 cut(s)	256
Bsh1285I	CGRYCG	2 cut(s)	122, 259
BshFI	GGCC	2 cut(s)	258, 630
BsiEI	CGRYCG	2 cut(s)	122, 259
BsiSI	CCGG	2 cut(s)	173, 213
BslI	CCNNNNNNNGG	3 cut(s)	165, 495, 626
BsnI	GGCC	2 cut(s)	258, 630
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
BspACI	CCGC	5 cut(s)	29, 102, 105, 131, 420
BspANI	GGCC	2 cut(s)	258, 630
BspCNI	CTCAG	2 cut(s)	386, 743
BspEI	TCCGGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	19, 171, 211
BspPI	GGATC	6 cut(s)	12, 25, 98, 204, 217, 289
BspQI	GCTCTTC	1 cut(s)	692
BssECI	CCNNGG	3 cut(s)	24, 201, 259
BssMI	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
BssNI	GRCGYC	2 cut(s)	66, 219
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	182, 430
Bst6I	CTCTTC	3 cut(s)	313, 440, 692
BstACI	GRCGYC	2 cut(s)	66, 219
BstC8I	GCNNGC	2 cut(s)	100, 129
BstDEI	CTNAG	2 cut(s)	373, 730
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	8 cut(s)	20, 93, 122, 212, 284, 326, 486, 736
BstMBI	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
BstMCI	CGRYCG	2 cut(s)	122, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	4 cut(s)	17, 209, 323, 733
BstYI	RGATCY	4 cut(s)	17, 209, 323, 733
BstZI	CGGCCG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	258, 630
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	187, 222
Cac8I	GCNNGC	2 cut(s)	100, 129
Cfr13I	GGNCC	1 cut(s)	498
CseI	GACGC	1 cut(s)	55
CviAII	CATG	4 cut(s)	345, 553, 661, 746
CviJI	RGCY	9 cut(s)	38, 98, 116, 170, 258, 291, 566, 630, 702
CviKI_1	RGCY	9 cut(s)	38, 98, 116, 170, 258, 291, 566, 630, 702
DdeI	CTNAG	2 cut(s)	373, 730
DpnI	GATC	8 cut(s)	19, 92, 121, 211, 283, 325, 485, 735
DpnII	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
EaeI	YGGCCR	1 cut(s)	256
EagI	CGGCCG	1 cut(s)	256
Eam1104I	CTCTTC	3 cut(s)	313, 440, 692
EarI	CTCTTC	3 cut(s)	313, 440, 692
EciI	GGCGGA	2 cut(s)	120, 146
EclXI	CGGCCG	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	498
Eco52I	CGGCCG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	348, 556, 664, 749
FaiI	YATR	4 cut(s)	346, 554, 662, 747
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FatI	CATG	4 cut(s)	344, 552, 660, 745
Fnu4HI	GCNGC	2 cut(s)	30, 103
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	30, 103
FspBI	CTAG	3 cut(s)	297, 563, 711
GluI	GCNGC	2 cut(s)	30, 103
HaeIII	GGCC	2 cut(s)	258, 630
HapII	CCGG	2 cut(s)	173, 213
HgaI	GACGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	66, 219
Hin1II	CATG	4 cut(s)	348, 556, 664, 749
HinfI	GANTC	2 cut(s)	134, 303
HpaII	CCGG	2 cut(s)	173, 213
HphI	GGTGA	2 cut(s)	227, 442
Hpy188I	TCNGA	7 cut(s)	95, 124, 243, 406, 643, 668, 733
Hpy188III	TCNNGA	4 cut(s)	173, 297, 375, 501
Hpy99I	CGWCG	7 cut(s)	37, 71, 430, 514, 517, 520, 523
HpyAV	CCTTC	4 cut(s)	106, 200, 427, 468
HpyCH4III	ACNGT	2 cut(s)	182, 430
HpyCH4IV	ACGT	2 cut(s)	6, 219
HpyCH4V	TGCA	3 cut(s)	197, 348, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	373, 730
HpySE526I	ACGT	2 cut(s)	6, 219
Hsp92I	GRCGYC	2 cut(s)	66, 219
Hsp92II	CATG	4 cut(s)	348, 556, 664, 749
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
LguI	GCTCTTC	1 cut(s)	692
LmnI	GCTCC	3 cut(s)	95, 124, 175
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	3 cut(s)	297, 563, 711
MaeII	ACGT	2 cut(s)	6, 219
MaeIII	GTNAC	4 cut(s)	182, 215, 220, 412
MalI	GATC	8 cut(s)	19, 92, 121, 211, 283, 325, 485, 735
MboI	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
MflI	RGATCY	4 cut(s)	17, 209, 323, 733
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	328, 677
MlyI	GAGTC	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	199
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	3 cut(s)	368, 458, 701
MseI	TTAA	2 cut(s)	252, 572
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	2 cut(s)	173, 213
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
NlaIII	CATG	4 cut(s)	348, 556, 664, 749
NlaIV	GGNNCC	3 cut(s)	19, 171, 211
NmeAIII	GCCGAG	2 cut(s)	5, 284
NmuCI	GTSAC	4 cut(s)	182, 215, 220, 412
NsiI	ATGCAT	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	3 cut(s)	183, 515, 518
PdmI	GAANNNNTTC	3 cut(s)	368, 458, 701
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	31, 104
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	19, 171, 211
PspPI	GGNCC	1 cut(s)	498
PsuI	RGATCY	4 cut(s)	17, 209, 323, 733
PvuI	CGATCG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	252, 572
SatI	GCNGC	2 cut(s)	30, 103
Sau3AI	GATC	8 cut(s)	17, 90, 119, 209, 281, 323, 483, 733
Sau96I	GGNCC	1 cut(s)	498
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	9, 26, 100, 222, 240, 441, 704
SfaNI	GCATC	1 cut(s)	206
SinI	GGWCC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	328, 677
SsiI	CCGC	5 cut(s)	29, 102, 105, 131, 420
SspMI	CTAG	3 cut(s)	297, 563, 711
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	182, 430
TaiI	ACGT	2 cut(s)	9, 222
TaqI	TCGA	4 cut(s)	118, 143, 362, 383
TasI	AATT	2 cut(s)	328, 677
TauI	GCSGC	2 cut(s)	32, 105
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	252, 572
Tru9I	TTAA	2 cut(s)	252, 572
TscAI	CASTG	2 cut(s)	187, 229
TseFI	GTSAC	4 cut(s)	182, 215, 220, 412
Tsp45I	GTSAC	4 cut(s)	182, 215, 220, 412
TspDTI	ATGAA	3 cut(s)	591, 597, 627
TspRI	CASTG	2 cut(s)	187, 229
VpaK11BI	GGWCC	1 cut(s)	498
XbaI	TCTAGA	1 cut(s)	296
XmnI	GAANNNNTTC	3 cut(s)	368, 458, 701
XspI	CTAG	3 cut(s)	297, 563, 711
ZraI	GACGTC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.